Pre_GI: BLASTP Hits

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Query: NC_004741:1792442:1793614 Shigella flexneri 2a str. 2457T, complete genome

Start: 1793614, End: 1794480, Length: 867

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012880:1585255:158825915882591589128870Dickeya dadantii Ech703, complete genomeShikimate dehydrogenase substrate binding domain protein1e-146519
NC_008258:1750964:175531417553141756063750Shigella flexneri 5 str. 8401, complete genomeputative oxidoreductase4e-145513
NC_015977:2807782:284480328448032845672870Roseburia hominis A2-183 chromosome, complete genomeshikimate 5-dehydrogenase1e-68259
NC_009922:42696:466674666747527861Alkaliphilus oremlandii OhILAs, complete genomeshikimate 5-dehydrogenase2e-59229
NC_009785:1414892:141729314172931418150858Streptococcus gordonii str. Challis substr. CH1, complete genomeshikimate 5-dehydrogenase6e-46184
NC_015474:252390:275352275352276173822Pyrococcus sp. NA2 chromosome, complete genomeshikimate 5-dehydrogenase3e-43175
NC_014122:549932:588069588069588902834Methanocaldococcus infernus ME chromosome, complete genomeshikimate 5-dehydrogenase4e-43175
NC_014355:399938:404381404381405235855Candidatus Nitrospira defluvii, complete genomeshikimate 5-dehydrogenase5e-43174
NC_019977:253895:258493258493259314822Methanomethylovorans hollandica DSM 15978, complete genomeshikimate 5-dehydrogenase1e-42173
NC_015573:1979202:198059219805921981548957Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeShikimate dehydrogenase7e-41167
NC_015387:1091403:111343611134361114248813Marinithermus hydrothermalis DSM 14884 chromosome, complete genomeShikimate dehydrogenase2e-39162
NC_007955:2074844:209948120994812100290810Methanococcoides burtonii DSM 6242, complete genomeshikimate 5-dehydrogenase2e-37156
NC_014804:341663:351086351086351904819Thermococcus barophilus MP chromosome, complete genomeshikimate 5-dehydrogenase I alpha4e-37155
NC_012108:2542328:254495725449572545772816Desulfobacterium autotrophicum HRM2, complete genomeAroE11e-35150
NC_005042:1719055:173579817357981736700903Prochlorococcus marinus subsp. marinus str. CCMP1375, completeShikimate 5-dehydrogenase5e-35148
NC_000868:416958:432656432656433450795Pyrococcus abyssi GE5, complete genomeshikimate 5-dehydrogenase1e-34147
NC_011979:3712845:373034837303483731220873Geobacter sp. FRC-32, complete genomeshikimate 5-dehydrogenase4e-34145
NC_015519:1888917:189192318919231892795873Tepidanaerobacter sp. Re1 chromosome, complete genomeShikimate dehydrogenase1e-33143
NC_008044:3024125:302898630289863029816831Silicibacter sp. TM1040, complete genomeshikimate 5-dehydrogenase1e-32140
NC_016633:1798758:181916918191691820050882Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomeshikimate 5-dehydrogenase3e-31135
NC_010814:1739706:176001217600121760893882Geobacter lovleyi SZ, complete genomeshikimate 5-dehydrogenase4e-31135
NC_014221:554764:561386561386562216831Truepera radiovictrix DSM 17093 chromosome, complete genomeshikimate 5-dehydrogenase4e-30132
NC_014727:95875:953469534695906561Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,shikimate 5-dehydrogenase and fad-dependent oxidase domain6e-30131
NC_003366:863437:875075875075875890816Clostridium perfringens str. 13, complete genomeshikimate 5-dehydrogenase2e-29129
NC_008262:784878:814079814079814894816Clostridium perfringens SM101, complete genomeshikimate 5-dehydrogenase3e-29129
NC_008261:817295:828901828901829716816Clostridium perfringens ATCC 13124, complete genomeshikimate 5-dehydrogenase1e-28126
NC_015425:2528549:255259725525972553409813Clostridium botulinum BKT015925 chromosome, complete genomeshikimate 5-dehydrogenase4e-28125
NC_009952:3596399:363194536319453632781837Dinoroseobacter shibae DFL 12, complete genomeshikimate dehydrogenase3e-27122
NC_008593:2281896:230243323024332303245813Clostridium novyi NT, complete genomeshikimate 5-dehydrogenase1e-26120
NC_007802:179780:187014187014187850837Jannaschia sp. CCS1, complete genomeShikimate 5-dehydrogenase8e-26117
NC_015563:2702787:270994927099492710788840Delftia sp. Cs1-4 chromosome, complete genomeShikimate dehydrogenase5e-25114
NC_014960:216965:223354223354224232879Anaerolinea thermophila UNI-1, complete genomeshikimate dehydrogenase1e-24113
NC_010125:1:145151451515372858Gluconacetobacter diazotrophicus PAl 5, complete genomeputative shikimate dehydrogenase2e-24112
NC_008343:2389710:239037423903742391243870Granulibacter bethesdensis CGDNIH1, complete genomeshikimate 5-dehydrogenase7e-22104
NC_009921:8549757:855440285544028555274873Frankia sp. EAN1pec, complete genomeShikimate dehydrogenase substrate binding domain protein5e-21101
NC_014924:3065430:308387430838743084725852Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeshikimate 5-dehydrogenase6e-21101
NC_002947:4293252:429723042972304298069840Pseudomonas putida KT2440, complete genomeshikimate 5-dehydrogenase8e-21101
NC_007181:141299:149768149768150559792Sulfolobus acidocaldarius DSM 639, complete genomeshikimate/quinate 5-dehydrogenase1e-20100
NC_014329:844622:849345849345850160816Corynebacterium pseudotuberculosis FRC41 chromosome, completeshikimate 5-dehydrogenase9e-21100
NC_016932:832748:837471837471838286816Corynebacterium pseudotuberculosis 316 chromosome, complete genomeshikimate 5-dehydrogenase3e-2099
NC_014614:2500301:250359825035982504434837Clostridium sticklandii, complete genomeShikimate dehydrogenase1e-1997.1
NC_009512:2238437:225730122573012258122822Pseudomonas putida F1, complete genomeShikimate dehydrogenase substrate binding, N-terminal domain protein2e-1996.7
NC_001263:72681:783807838079201822Deinococcus radiodurans R1 chromosome 1, complete sequenceshikimate 5-dehydrogenase2e-1996.7
NC_009921:8549757:861204286120428612860819Frankia sp. EAN1pec, complete genomeShikimate dehydrogenase substrate binding domain protein1e-1893.6
NC_015563:2702787:271476127147612715594834Delftia sp. Cs1-4 chromosome, complete genomeShikimate dehydrogenase2e-1893.2
NC_013446:2164974:218289021828902183702813Comamonas testosteroni CNB-2, complete genomeshikimate 5-dehydrogenase2e-1892.8
NC_008010:105665:115638115638116507870Deinococcus geothermalis DSM 11300 plasmid 1, complete sequenceShikimate dehydrogenase substrate binding-like4e-1892
NC_016781:844613:849336849336850037702Corynebacterium pseudotuberculosis 3/99-5 chromosome, completeshikimate 5-dehydrogenase4e-1892
NC_006155:2893802:289966628996662900484819Yersinia pseudotuberculosis IP 32953, complete genomeshikimate 5-dehydrogenase5e-1891.7
NC_010634:2810815:281667928166792817497819Yersinia pseudotuberculosis PB1/+, complete genomeshikimate dehydrogenase substrate binding subunit5e-1891.7
NC_003454:677699:683152683152683901750Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeShikimate 5-dehydrogenase7e-1891.3
NC_006511:3364448:337965333796533380471819Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCshikimate 5-dehydrogenase7e-1891.3
NC_017514:1885154:190204319020431902852810Neisseria meningitidis M01-240149 chromosome, complete genomeshikimate 5-dehydrogenase1e-1790.9
NC_017518:2041282:205627220562722057081810Neisseria meningitidis NZ-05/33 chromosome, complete genomeshikimate 5-dehydrogenase1e-1790.9
NC_012779:3176820:323099232309923231780789Edwardsiella ictaluri 93-146, complete genomehypothetical protein1e-1790.5
NC_006087:28490:300263002630745720Leifsonia xyli subsp. xyli str. CTCB07, complete genomeshikimate 5-dehydrogenase1e-1790.5
NC_010067:4149298:414990241499024150723822Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-1789.7
NC_011035:1564821:158304715830471583886840Neisseria gonorrhoeae NCCP11945 chromosome, complete genomeputative shikimate dehydrogenase4e-1789
NC_017511:1467090:148588314858831486722840Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genomeputative shikimate dehydrogenase4e-1789
NC_002946:1556000:157380215738021574611810Neisseria gonorrhoeae FA 1090, complete genomeputative shikimate dehydrogenase3e-1789
NC_015580:1302000:132602613260261326904879Novosphingobium sp. PP1Y, complete genomeshikimate 5-dehydrogenase3e-1789
NC_003106:2272313:228195322819532282735783Sulfolobus tokodaii str. 7, complete genomehypothetical shikimate 5-dehydrogenase5e-1788.6
NC_002695:4153394:416503241650324165850819Escherichia coli O157:H7 str. Sakai, complete genomeshikimate 5-dehydrogenase8e-1787.8
NC_009664:3969609:397398339739833974843861Kineococcus radiotolerans SRS30216, complete genomeShikimate dehydrogenase substrate binding domain protein1e-1687.4
NC_002935:1315019:135919613591961360065870Corynebacterium diphtheriae NCTC 13129, complete genomeshikimate 5-dehydrogenase2e-1686.7
NC_010120:1814592:183351518335151834324810Neisseria meningitidis 053442, complete genomeshikimate dehydrogenase2e-1686.7
NC_016787:1276983:132230613223061323148843Corynebacterium diphtheriae HC03 chromosome, complete genomeshikimate 5-dehydrogenase2e-1686.7
NC_016790:1259356:129968812996881300530843Corynebacterium diphtheriae VA01 chromosome, complete genomeshikimate 5-dehydrogenase2e-1686.7
NC_016785:1297208:131447113144711315313843Corynebacterium diphtheriae CDCE 8392 chromosome, complete genomeshikimate 5-dehydrogenase2e-1686.7
NC_017512:1824966:184383718438371844646810Neisseria meningitidis WUE 2594, complete genomeshikimate dehydrogenase2e-1686.7
NC_008767:1829500:184875318487531849562810Neisseria meningitidis FAM18, complete genomeshikimate dehydrogenase2e-1686.7
NC_016782:1316467:133288813328881333730843Corynebacterium diphtheriae 241 chromosome, complete genomeshikimate 5-dehydrogenase2e-1686.3
NC_016786:1316436:133285813328581333700843Corynebacterium diphtheriae HC01 chromosome, complete genomeshikimate 5-dehydrogenase2e-1686.3
NC_003112:364869:364869364869365678810Neisseria meningitidis MC58, complete genomeshikimate 5-dehydrogenase2e-1686.3
NC_017516:364404:364404364404365213810Neisseria meningitidis H44/76 chromosome, complete genomeshikimate 5-dehydrogenase2e-1686.3
NC_015424:4251369:427545242754524276273822Aeromonas veronii B565 chromosome, complete genomeShikimate dehydrogenase3e-1685.9
NC_016789:1334514:137869613786961379538843Corynebacterium diphtheriae PW8 chromosome, complete genomeshikimate 5-dehydrogenase3e-1685.9
NC_016799:1343020:138834013883401389182843Corynebacterium diphtheriae 31A chromosome, complete genomeshikimate 5-dehydrogenase3e-1685.9
NC_016800:1344189:136145213614521362294843Corynebacterium diphtheriae BH8 chromosome, complete genomeshikimate 5-dehydrogenase3e-1685.9
NC_016801:1361597:137801613780161378858843Corynebacterium diphtheriae C7 (beta) chromosome, complete genomeshikimate 5-dehydrogenase3e-1685.9
NC_003116:2063500:207914620791462079961816Neisseria meningitidis Z2491, complete genomeshikimate dehydrogenase3e-1685.9
NC_016783:1313008:135718813571881358030843Corynebacterium diphtheriae INCA 402 chromosome, complete genomeshikimate 5-dehydrogenase3e-1685.9
NC_016788:1315877:133229913322991333141843Corynebacterium diphtheriae HC04 chromosome, complete genomeshikimate 5-dehydrogenase3e-1685.9
NC_016802:1317365:133378713337871334629843Corynebacterium diphtheriae HC02 chromosome, complete genomeshikimate 5-dehydrogenase5e-1685.1
CP002185:3627992:364298936429893643807819Escherichia coli W, complete genomedehydroshikimate reductase, NAD(P)-binding protein6e-1684.7
NC_013016:1801000:181996818199681820777810Neisseria meningitidis alpha14 chromosome, complete genomeshikimate 5-dehydrogenase6e-1684.7
NC_007614:620500:620577620577621410834Nitrosospira multiformis ATCC 25196 chromosome 1, completeshikimate 5-dehydrogenase7e-1684.7
NC_015151:1403500:140835914083591409162804Vulcanisaeta moutnovskia 768-28 chromosome, complete genomeshikimate dehydrogenase substrate binding domain protein9e-1684.3
NC_009512:3068495:306768030676803068498819Pseudomonas putida F1, complete genomeshikimate 5-dehydrogenase1e-1584
NC_017291:829577:8295778295778310101434Chlamydophila psittaci C19/98 chromosome, complete genomebifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein1e-1583.6
NC_015470:831863:8318638318638332961434Chlamydophila psittaci 6BC chromosome, complete genomebifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein1e-1583.6
NC_017986:5467279:548320254832025484020819Pseudomonas putida ND6 chromosome, complete genomeshikimate 5-dehydrogenase2e-1583.2
NC_010557:316000:330534330534331370837Burkholderia ambifaria MC40-6 chromosome 3, complete sequenceShikimate dehydrogenase substrate binding domain protein3e-1582.4
NC_013522:1683326:170519917051991706059861Thermanaerovibrio acidaminovorans DSM 6589, complete genomeShikimate dehydrogenase substrate binding domain protein3e-1479.3
NC_015518:1095879:110422611042261105014789Acidianus hospitalis W1 chromosome, complete genomeShikimate dehydrogenase substrate binding domain-containing protein3e-1479.3
NC_017513:1845069:186073918607391861548810Neisseria meningitidis G2136 chromosome, complete genomeshikimate 5-dehydrogenase5e-1478.6
NC_007963:317291:332550332550333416867Chromohalobacter salexigens DSM 3043, complete genomeShikimate 5-dehydrogenase1e-1377
NC_009440:1810301:181730518173051818123819Metallosphaera sedula DSM 5348 chromosome, complete genomeshikimate dehydrogenase1e-1377
NC_008786:2489104:249396824939682494834867Verminephrobacter eiseniae EF01-2, complete genomeshikimate 5-dehydrogenase2e-1376.6
NC_004061:540354:543669543669544490822Buchnera aphidicola str. Sg (Schizaphis graminum), complete genomeshikimate 5-dehydrogenase2e-1376.3
NC_008577:44184:486384863849516879Shewanella sp. ANA-3 chromosome 1, complete sequenceshikimate 5-dehydrogenase7e-1374.7
NC_013521:1976331:197885019788501979704855Sanguibacter keddieii DSM 10542, complete genomeshikimate 5-dehydrogenase7e-1374.7
NC_013282:3962188:397488539748853975703819Cronobacter turicensis, complete genomeShikimate dehydrogenase1e-1273.6
NC_017275:1705827:171580417158041716613810Sulfolobus islandicus HVE10/4 chromosome, complete genomeshikimate dehydrogenase3e-1272.8
NC_012726:1685442:169172216917221692531810Sulfolobus islandicus M.16.4 chromosome, complete genomeshikimate dehydrogenase3e-1272.8
NC_012632:1785210:179149017914901792299810Sulfolobus islandicus M.16.27 chromosome, complete genomeshikimate dehydrogenase3e-1272.8
NC_012588:1655615:166559216655921666401810Sulfolobus islandicus M.14.25 chromosome, complete genomeshikimate dehydrogenase substrate binding domain-containing protein3e-1272.8
NC_015846:924087:926519926519927265747Capnocytophaga canimorsus Cc5 chromosome, complete genomeshikimate dehydrogenase1e-1170.5
NC_013730:834500:860262860262861005744Spirosoma linguale DSM 74, complete genomeShikimate dehydrogenase substrate binding domain protein5e-1168.6
NC_004545:499709:511465511465512313849Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genomeshikimate 5-dehydrogenase9e-1167.8
NC_016002:2652500:267029226702922671170879Pseudogulbenkiania sp. NH8B, complete genomeshikimate dehydrogenase substrate binding domain containing protein1e-1067.4
NC_005061:214168:237684237684238568885Candidatus Blochmannia floridanus, complete genomeshikimate 5-dehydrogenase3e-1066.2
NC_008513:343540:353033353033353875843Buchnera aphidicola str. Cc (Cinara cedri), complete genomeAroE4e-1065.5
NC_016625:171341:192373192373193188816Burkholderia sp. YI23 chromosome 2, complete sequenceshikimate dehydrogenase2e-0963.2
NC_014109:393500:414783414783415619837Candidatus Riesia pediculicola USDA chromosome, complete genomeshikimate 5-dehydrogenase2e-0859.7
NC_015696:1853979:186852718685271869369843Francisella sp. TX077308 chromosome, complete genomeshikimate 5-dehydrogenase I alpha1e-0653.9