Pre_GI Gene

Some Help

Host: NC_009512 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009512:3068495 Pseudomonas putida F1, complete genome

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from a polluted creek in Urbana, Illinois, USA by enrichment culture with ethylbenzyne as a sole source of carbon and energy. Its ability to degrade several different compounds including benzene, toluene, and ethylbenzene makes this species useful in the bioremediation of sites contaminated with multiple aromatic hydrocarbons. Underground gasoline tanks which have developed leaks can contaminate soil and water with a variety of these compounds. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
30676803068498819shikimate 5-dehydrogenaseQuickGO ontologyBLASTP
306849530697271233L-carnitine dehydratasebile acid-inducible protein FQuickGO ontologyBLASTP
30697243070179456MaoC domain protein dehydrataseQuickGO ontologyBLASTP
30701763070574399hypothetical proteinBLASTP
307057130715189482-dehydropantoate 2-reductaseQuickGO ontologyBLASTP
30715793072511933transcriptional regulator LysR familyQuickGO ontologyBLASTP
307265430746572004hypothetical proteinBLASTP
30748543075615762short-chain dehydrogenasereductase SDRQuickGO ontologyBLASTP
307603530772911257NADHflavin oxidoreductaseNADH oxidaseQuickGO ontologyBLASTP
30776473078396750ThiJPfpI domain proteinQuickGO ontologyBLASTP
30785113079437927hypothetical proteinBLASTP
30794533079932480putative transcriptional regulator MerR familyQuickGO ontologyBLASTP
30800703080864795short-chain dehydrogenasereductase SDRQuickGO ontologyBLASTP
308091130819241014Alcohol dehydrogenase zinc-binding domain proteinQuickGO ontologyBLASTP
30820243082467444transcriptional regulator HxlR familyQuickGO ontologyBLASTP
30825983083479882transcriptional regulator LysR familyQuickGO ontologyBLASTP
308378930848171029NAD-dependent epimerasedehydrataseQuickGO ontologyBLASTP
30851193085634516protein of unknown function UPF0157QuickGO ontologyBLASTP
30856313085846216hypothetical proteinBLASTP
308586530868661002Alcohol dehydrogenase zinc-binding domain proteinQuickGO ontologyBLASTP
30869743087852879transcriptional regulator LysR familyQuickGO ontologyBLASTP
30879153088736822helix-turn-helix- domain containing protein AraC typeQuickGO ontologyBLASTP