Pre_GI: BLASTN Hits

Some Help

Query: NC_010001:4486170 Clostridium phytofermentans ISDg, complete genome

Start: 4486170, End: 4517305, Length: 31136

Host Lineage: Lachnoclostridium phytofermentans; Lachnoclostridium; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolated from forest soil near the Quabbin Reservoir in Massachusetts, USA. This organism plays an important industrial and ecological role in the anaerobic fermentation of cellulose and produces economically significant levels of acetate and ethanol. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_014376:4048728*4048728406728818561Clostridium saccharolyticum WM1 chromosome, complete genome2e-115424BLASTN svgBLASTP svg
NC_015977:3127500*3127500314861521116Roseburia hominis A2-183 chromosome, complete genome7e-54220BLASTN svgBLASTP svg
NC_012781:379200*37920039812018921Eubacterium rectale ATCC 33656, complete genome4e-52214BLASTN svgBLASTP svg
NC_015275:3846260*3846260387224625987Clostridium lentocellum DSM 5427 chromosome, complete genome4e-49204BLASTN svgBLASTP svg
NC_015737:1931541*1931541195374722207Clostridium sp. SY8519, complete genome1e-30143BLASTN svgBLASTP svg
NC_013316:81969*8196911125629288Clostridium difficile R20291, complete genome5e-27131BLASTN svgBLASTP svg
NC_009089:87581*8758110818120601Clostridium difficile 630, complete genome5e-27131BLASTN svgBLASTP svg
NC_011898:874457*87445790039625940Clostridium cellulolyticum H10, complete genome5e-24121BLASTN svgBLASTP svg
NC_009922:542500*54250057462332124Alkaliphilus oremlandii OhILAs, complete genome7e-23117BLASTN svgBLASTP svg
NC_010723:223935*22393527475150817Clostridium botulinum E3 str. Alaska E43, complete genome1e-21113BLASTN svgBLASTP svg
NC_021182:4557608*4557608459730239695Clostridium pasteurianum BC1, complete genome7e-20107BLASTN svgBLASTP svg
NC_018515:223164*22316424765124488Desulfosporosinus meridiei DSM 13257 chromosome, complete genome7e-20107BLASTN svgBLASTP svg
NC_010520:3788702*3788702382916340462Clostridium botulinum A3 str. Loch Maree, complete genome7e-20107BLASTN svgBLASTP svg
NC_003869:2143892*2143892219937255481Thermoanaerobacter tengcongensis MB4, complete genome3e-19105BLASTN svgBLASTP svg
NC_004557:2711702*2711702274444632745Clostridium tetani E88, complete genome3e-19105BLASTN svgBLASTP svg
NC_014657:1540500*1540500155862118122Caldicellulosiruptor owensensis OL chromosome, complete genome3e-19105BLASTN svgBLASTP svg
NC_014392:969498*969498100915039653Caldicellulosiruptor obsidiansis OB47 chromosome, complete genome1e-18103BLASTN svgBLASTP svg
NC_007929:1463295*1463295150502641732Lactobacillus salivarius subsp. salivarius UCC118, complete genome1e-18103BLASTN svgBLASTP svg
NC_014614:2295131*2295131232283227702Clostridium sticklandii, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_014328:4387303*4387303445852771225Clostridium ljungdahlii ATCC 49587 chromosome, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_003030:3251941*3251941329013838198Clostridium acetobutylicum ATCC 824, complete genome3e-1695.6BLASTN svgBLASTP svg
NC_010516:3759136*3759136379956240427Clostridium botulinum B1 str. Okra, complete genome3e-1695.6BLASTN svgBLASTP svg
NC_012563:3956500*3956500399649139992Clostridium botulinum A2 str. Kyoto, complete genome3e-1695.6BLASTN svgBLASTP svg
NC_013216:293571*29357131635022780Desulfotomaculum acetoxidans DSM 771, complete genome3e-1695.6BLASTN svgBLASTP svg
NC_014652:1032711*1032711107395141241Caldicellulosiruptor hydrothermalis 108 chromosome, complete3e-1695.6BLASTN svgBLASTP svg
NC_015687:3252233*3252233329176539533Clostridium acetobutylicum DSM 1731 chromosome, complete genome3e-1695.6BLASTN svgBLASTP svg
NC_018704:124823*12482314364118819Amphibacillus xylanus NBRC 15112, complete genome1e-1593.7BLASTN svgBLASTP svg
NC_014393:4482896*4482896452909946204Clostridium cellulovorans 743B chromosome, complete genome1e-1593.7BLASTN svgBLASTP svg
NC_004193:119737*11973716514845412Oceanobacillus iheyensis HTE831, complete genome4e-1591.7BLASTN svgBLASTP svg
NC_015949:1180755*1180755121693036176Caldicellulosiruptor lactoaceticus 6A chromosome, complete genome4e-1591.7BLASTN svgBLASTP svg
NC_016012:1380260*1380260140143821179Candidatus Arthromitus sp. SFB-rat-Yit, complete genome4e-1591.7BLASTN svgBLASTP svg
NC_003366:2731995*2731995276168829694Clostridium perfringens str. 13, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_008261:2957354*2957354298433226979Clostridium perfringens ATCC 13124, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_011134:51218*512187644125224Streptococcus equi subsp. zooepidemicus str. MGCS10565, complete6e-1487.7BLASTN svgBLASTP svg
NC_012471:51305*513057507523771Streptococcus equi subsp. equi 4047, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_014410:403776*40377646022156446Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,6e-1487.7BLASTN svgBLASTP svg
NC_014721:1777644*1777644181600538362Caldicellulosiruptor kristjanssonii 177R1B chromosome, complete6e-1487.7BLASTN svgBLASTP svg
NC_019970:336472*33647241533078859Thermoanaerobacterium thermosaccharolyticum M0795, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_007413:868678*86867888796119284Anabaena variabilis ATCC 29413, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_008555:2597980*2597980262082422845Listeria welshimeri serovar 6b str. SLCC5334, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_014152:305955*30595532559919645Thermincola sp. JR, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_014759:3572500*3572500360200929510Marivirga tractuosa DSM 4126 chromosome, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_018664:2357882*2357882238773229851Clostridium acidurici 9a chromosome, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_009437:2367842*2367842241150043659Caldicellulosiruptor saccharolyticus DSM 8903, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_012034:1783912*1783912182367039759Anaerocellum thermophilum DSM 6725, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_014720:1140765*1140765116059919835Caldicellulosiruptor kronotskyensis 2002 chromosome, complete1e-1283.8BLASTN svgBLASTP svg
NC_020134:2801199*2801199282265421456Clostridium stercorarium subsp. stercorarium DSM 8532, complete1e-1283.8BLASTN svgBLASTP svg
NC_015391:2523451*2523451255656933119Carnobacterium sp. 17-4 chromosome, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_008262:2598920*2598920264903950120Clostridium perfringens SM101, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_011999:198769*19876922025721489Macrococcus caseolyticus JCSC5402, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_013893:830282*83028285359923318Staphylococcus lugdunensis HKU09-01 chromosome, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_014925:1970500*1970500198985319354Staphylococcus pseudintermedius HKU10-03 chromosome, complete2e-1179.8BLASTN svgBLASTP svg
NC_020164:701151*70115172886827718Staphylococcus warneri SG1, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_002976:1844901*1844901187401629116Staphylococcus epidermidis RP62A, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_004461:1849176*1849176187898629811Staphylococcus epidermidis ATCC 12228, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_013921:1977444*1977444203224454801Thermoanaerobacter italicus Ab9 chromosome, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_014209:1910109*1910109194573835630Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,6e-1177.8BLASTN svgBLASTP svg
NC_014829:133305*13330517500741703Bacillus cellulosilyticus DSM 2522 chromosome, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_019757:3492500*3492500351201419515Cylindrospermum stagnale PCC 7417, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_007350:692041*69204171972727687Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305,2e-1075.8BLASTN svgBLASTP svg
NC_003923:2301234*2301234231971018477Staphylococcus aureus subsp. aureus MW2, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_002953:2282236*2282236231132529090Staphylococcus aureus subsp. aureus MSSA476, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_002952:2390668*2390668241976729100Staphylococcus aureus subsp. aureus MRSA252, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_002951:2288674*2288674230711718444Staphylococcus aureus subsp. aureus COL, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_002758:2359329*2359329237711617788Staphylococcus aureus subsp. aureus Mu50, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_002745:2289829*2289829230761617788Staphylococcus aureus subsp. aureus N315, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_002162:268049*26804929736629318Ureaplasma parvum serovar 3 str. ATCC 700970, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007622:2239799*2239799227094331145Staphylococcus aureus RF122, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007793:2352953*2352953237101718065Staphylococcus aureus subsp. aureus USA300, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015958:2251619*2251619232072969111Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015516:131564*13156415661425051Melissococcus plutonius ATCC 35311, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_014448:487381*48738151116023780Mycoplasma hyorhinis HUB-1 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_013656:2382000*2382000240458622587Lactococcus lactis subsp. lactis KF147, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_013171:1677543*1677543171632938787Anaerococcus prevotii DSM 20548, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010079:2352691*2352691237059917909Staphylococcus aureus subsp. aureus USA300_TCH1516, complete2e-1075.8BLASTN svgBLASTP svg
NC_009782:2362000*2362000237977917780Staphylococcus aureus subsp. aureus Mu3, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007795:2299327*2299327231711417788Staphylococcus aureus subsp. aureus NCTC 8325, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_003272:5040500*5040500506301222513Nostoc sp. PCC 7120, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_008255:3578883*3578883360220323321Cytophaga hutchinsonii ATCC 33406, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_012121:1728913*1728913174659917687Staphylococcus carnosus subsp. carnosus TM300, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_014760:299392*29939232976830377Mycoplasma bovis PG45 chromosome, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_015725:670719*67071969912728409Mycoplasma bovis Hubei-1 chromosome, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_015913:1491393*1491393153098039588Candidatus Arthromitus sp. SFB-mouse-Japan, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_019907:467377*46737748686719491Liberibacter crescens BT-1 chromosome, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_015177:2482253*2482253250169619444Pedobacter saltans DSM 12145 chromosome, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_012806:105133*10513314579440662Mycoplasma conjunctivae, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_007168:813957*81395783855024594Staphylococcus haemolyticus JCSC1435, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_014014:117925*11792514454326619Mycoplasma crocodyli MP145 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_015555:327562*32756238328255721Thermoanaerobacterium xylanolyticum LX-11 chromosome, complete2e-0869.9BLASTN svgBLASTP svg
NC_020291:39000463900046392536225317Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome2e-0869.9BLASTN svgBLASTP svg
NC_020291:166500*16650019679930300Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome2e-0869.9BLASTN svgBLASTP svg
NC_020995:245671*24567126941823748Enterococcus casseliflavus EC20, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_004829:64000*640008360419605Mycoplasma gallisepticum R, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_009012:3421000*3421000343886317864Clostridium thermocellum ATCC 27405, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_009089:117980*11798016311645137Clostridium difficile 630, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_010674:222016*22201625822836213Clostridium botulinum B str. Eklund 17B, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_011899:124500*12450014268218183Halothermothrix orenii H 168, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_013316:120759*12075915711036352Clostridium difficile R20291, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_020291:22914182291418231430022883Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome6e-0867.9BLASTN svgBLASTP svg
NC_015601:1229909*1229909125272022812Erysipelothrix rhusiopathiae str. Fujisawa, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_004668:191732*19173221421422483Enterococcus faecalis V583, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_000921:1343701*1343701136617222472Helicobacter pylori J99, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_013061:717752*71775274137623625Pedobacter heparinus DSM 2366, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_014330:1113145*1113145114959936455Brachyspira pilosicoli 95/1000 chromosome, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_014538:1998180*1998180202679728618Thermoanaerobacter sp. X513 chromosome, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_014964:388458*38845844542856971Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, complete9e-0763.9BLASTN svgBLASTP svg
NC_018604:2579000*2579000263363754638Brachyspira pilosicoli WesB complete genome9e-0763.9BLASTN svgBLASTP svg
NC_019908:2068631*2068631210767339043Brachyspira pilosicoli P43/6/78 chromosome, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_019904:243465*24346526171818254Echinicola vietnamensis DSM 17526 chromosome, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_019978:178277*17827721455436278Halobacteroides halobius DSM 5150, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_013192:232778*23277828299350216Leptotrichia buccalis DSM 1135, complete genome4e-0661.9BLASTN svgBLASTP svg