Pre_GI: BLASTN Hits

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Query: NC_009439:2337024 Pseudomonas mendocina ymp, complete genome

Start: 2337024, End: 2362354, Length: 25331

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015410:2838132*2838132286405125920Pseudomonas mendocina NK-01 chromosome, complete genome03774BLASTN svgBLASTP svg
NC_015410:3502099*3502099352815926061Pseudomonas mendocina NK-01 chromosome, complete genome01766BLASTN svgBLASTP svg
NC_015410:1202370*1202370122824825879Pseudomonas mendocina NK-01 chromosome, complete genome01544BLASTN svgBLASTP svg
NC_015740:26143172614317265004935733Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete01076BLASTN svgBLASTP svg
NC_015410:1324313*1324313135087526563Pseudomonas mendocina NK-01 chromosome, complete genome1e-159571BLASTN svgBLASTP svg
NC_007005:2149275*2149275217042621152Pseudomonas syringae pv. syringae B728a, complete genome1e-70276BLASTN svgBLASTP svg
NC_011770:45421834542183456916026978Pseudomonas aeruginosa LESB58, complete genome6e-66260BLASTN svgBLASTP svg
NC_008463:43421194342119436920327085Pseudomonas aeruginosa UCBPP-PA14, complete genome4e-64254BLASTN svgBLASTP svg
NC_002516:77678777678780223925453Pseudomonas aeruginosa PAO1, complete genome9e-62246BLASTN svgBLASTP svg
NC_004129:2034500*2034500206459930100Pseudomonas fluorescens Pf-5, complete genome8e-47196BLASTN svgBLASTP svg
NC_012660:5121219*5121219514562724409Pseudomonas fluorescens SBW25 chromosome, complete genome2e-32149BLASTN svgBLASTP svg
NC_015061:38019273801927382632824402Rahnella sp. Y9602 chromosome, complete genome3e-31145BLASTN svgBLASTP svg
NC_015703:3842144*3842144386963427491Runella slithyformis DSM 19594 chromosome, complete genome4e-27131BLASTN svgBLASTP svg
NC_004129:17418161741816177185030035Pseudomonas fluorescens Pf-5, complete genome2e-26129BLASTN svgBLASTP svg
NC_007643:791500*79150081271221213Rhodospirillum rubrum ATCC 11170, complete genome6e-26127BLASTN svgBLASTP svg
NC_004547:1970686*1970686199651325828Erwinia carotovora subsp. atroseptica SCRI1043, complete genome1e-23119BLASTN svgBLASTP svg
NC_012917:2921932*2921932295050128570Pectobacterium carotovorum subsp. carotovorum PC1, complete genome1e-23119BLASTN svgBLASTP svg
NC_013421:3117639*3117639314038322745Pectobacterium wasabiae WPP163, complete genome1e-23119BLASTN svgBLASTP svg
NC_014500:3023762*3023762306170037939Dickeya dadantii 3937 chromosome, complete genome1e-23119BLASTN svgBLASTP svg
NC_013592:1730505*1730505176316532661Dickeya dadantii Ech586, complete genome2e-22115BLASTN svgBLASTP svg
NC_012912:1788308*1788308184662758320Dickeya zeae Ech1591, complete genome2e-22115BLASTN svgBLASTP svg
NC_002505:1892430*1892430192509932670Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete5e-1797.6BLASTN svgBLASTP svg
NC_004603:1115134*1115134114139026257Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete5e-1797.6BLASTN svgBLASTP svg
NC_013456:2528284*2528284254628518002Vibrio sp. Ex25 chromosome 1, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_014217:4597426*4597426462121223787Starkeya novella DSM 506 chromosome, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_012691:2097287*2097287211808120795Tolumonas auensis DSM 9187, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_009778:2227627*2227627228586658240Enterobacter sakazakii ATCC BAA-894, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_009348:2631759*2631759265138819630Aeromonas salmonicida subsp. salmonicida A449, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_008570:1986466*1986466201051824053Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_009512:15181131518113155588037768Pseudomonas putida F1, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_009439:1174432*1174432119973625305Pseudomonas mendocina ymp, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_009667:1371924*1371924140112629203Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequence1e-1489.7BLASTN svgBLASTP svg
NC_007946:1119000*1119000114261923620Escherichia coli UTI89, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_006905:1186895*1186895121502828134Salmonella enterica subsp. enterica serovar Choleraesuis str2e-1385.7BLASTN svgBLASTP svg
NC_006511:1770000*1770000179181621817Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC2e-1385.7BLASTN svgBLASTP svg
NC_004631:1842050*1842050186312621077Salmonella enterica subsp. enterica serovar Typhi Ty2, complete2e-1385.7BLASTN svgBLASTP svg
NC_004337:1065609*1065609109071125103Shigella flexneri 2a str. 301, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_004088:2491303*2491303251808626784Yersinia pestis KIM, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_003198:1117687*1117687114274925063Salmonella enterica subsp. enterica serovar Typhi str. CT18,2e-1385.7BLASTN svgBLASTP svg
NC_003197:12075971207597123259925003Salmonella typhimurium LT2, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_000913:1087062*1087062110699919938Escherichia coli K12, complete genome2e-1385.7BLASTN svgBLASTP svg
AC_000091:1083798*1083798110686123064Escherichia coli W3110 DNA, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_008258:1076922*1076922110024923328Shigella flexneri 5 str. 8401, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_010067:1782998*1782998180098317986Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete2e-1385.7BLASTN svgBLASTP svg
NC_015968:1709680*1709680173221922540Enterobacter asburiae LF7a chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_015663:3466471*3466471350514038670Enterobacter aerogenes KCTC 2190 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_014121:2629075*2629075265233623262Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete2e-1385.7BLASTN svgBLASTP svg
NC_013716:1178383*1178383120516726785Citrobacter rodentium ICC168, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_011149:1987291*1987291203423646946Salmonella enterica subsp. enterica serovar Agona str. SL483,2e-1385.7BLASTN svgBLASTP svg
NC_011083:12165001216500123593619437Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,2e-1385.7BLASTN svgBLASTP svg
NC_011080:12099351209935123471124777Salmonella enterica subsp. enterica serovar Newport str. SL254,2e-1385.7BLASTN svgBLASTP svg
NC_010468:2809125*2809125282748818364Escherichia coli ATCC 8739, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_010465:2383219*2383219240542422206Yersinia pseudotuberculosis YPIII, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_010102:1979742*1979742200183422093Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,2e-1385.7BLASTN svgBLASTP svg
NC_014323:31951783195178321959924422Herbaspirillum seropedicae SmR1 chromosome, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_005296:5238882*5238882526489126010Rhodopseudomonas palustris CGA009, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_010172:798923*79892388030381381Methylobacterium extorquens PA1, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_010505:1205747*1205747122904923303Methylobacterium radiotolerans JCM 2831, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_010725:750911*75091177963428724Methylobacterium populi BJ001, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_011004:5520771*5520771554678126011Rhodopseudomonas palustris TIE-1, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_013416:1429881*1429881145213822258Aggregatibacter actinomycetemcomitans D11S-1, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_016010:1169850*1169850119450124652Xanthomonas axonopodis pv. citrumelo F1 chromosome, complete1e-1179.8BLASTN svgBLASTP svg
NC_007508:1221500*1221500126063139132Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_014366:1435785*1435785146660130817Gamma proteobacterium HdN1, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_015856:4975815*4975815499935023536Collimonas fungivorans Ter331 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_008321:1993541*1993541201934825808Shewanella sp. MR-4, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_008322:2077628*2077628211677239145Shewanella sp. MR-7, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_008577:2115440*2115440215134235903Shewanella sp. ANA-3 chromosome 1, complete sequence3e-0971.9BLASTN svgBLASTP svg
NC_008343:1548020*1548020157986331844Granulibacter bethesdensis CGDNIH1, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_007802:1991211*1991211202618734977Jannaschia sp. CCS1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_007493:1929000*1929000195414225143Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence2e-0765.9BLASTN svgBLASTP svg
NC_003911:2042389*2042389206571223324Silicibacter pomeroyi DSS-3, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_007298:2170181*2170181219259922419Dechloromonas aromatica RCB, complete genome3e-0661.9BLASTN svgBLASTP svg