Pre_GI Gene

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Host: NC_004129 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004129:1741816 Pseudomonas fluorescens Pf-5, complete genome

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
174181617505368721filamentous haemagglutinin family protein intein-containingQuickGO ontologyBLASTP
17528741753146273hypothetical proteinBLASTP
17535931753703111filamentous hemagglutinin intein-containing putativeQuickGO ontologyBLASTP
175386917571623294filamentous haemagglutinin family proteinQuickGO ontologyBLASTP
175870717599661260hypothetical proteinBLASTP
17600331760980948transcriptional regulator AraC familyQuickGO ontologyBLASTP
17610811761824744hypothetical proteinBLASTP
17620221762414393hypothetical proteinBLASTP
17624221763291870lipoprotein putativeQuickGO ontologyBLASTP
17633571764076720lipoprotein putativeQuickGO ontologyBLASTP
17642741764462189hypothetical proteinBLASTP
17647901765641852hypothetical proteinBLASTP
17656701766092423hypothetical proteinBLASTP
17661731767102930hypothetical proteinBLASTP
176711117682711161major facilitator family transporterQuickGO ontologyBLASTP
17683761769269894transcriptional regulator LysR familyQuickGO ontologyBLASTP
1769290176938596hypothetical protein
17694031769531129hypothetical protein
17696201769880261hypothetical protein
17699081770132225hypothetical protein
177047117718501380sodium-solute symporter putativeQuickGO ontologyBLASTP