Pre_GI Gene

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Host: NC_004603 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004603:1115134 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
11151341115703570hypothetical proteinBLASTP
111570611168721167hypothetical proteinBLASTP
11169461117557612hypothetical proteinBLASTP
111761111200312421sensor histidine kinaseQuickGO ontologyBLASTP
11204881120937450hypothetical proteinBLASTP
1121082112116988tRNA-SerQuickGO ontologyBLASTP
112125211223881137hypothetical proteinBLASTP
112258011244031824putative helicaseQuickGO ontologyBLASTP
11247671125009243putative immunity repressor proteinQuickGO ontologyBLASTP
11251311125520390hypothetical protein
11255821126211630hypothetical protein
11265131127097585hypothetical protein
112770611289441239integrase phage familyQuickGO ontologyBLASTP
11290151129764750hypothetical proteinBLASTP
112980711316811875hypothetical proteinBLASTP
113241611338341419hypothetical proteinBLASTP
11342071134998792hypothetical proteinBLASTP
11349951135573579hypothetical proteinBLASTP
113557611389953420putative ATP-dependent DNA helicaseQuickGO ontologyBLASTP
11390581139798741hypothetical proteinBLASTP
113977311409511179hypothetical proteinBLASTP
11409321141390459hypothetical proteinBLASTP