Pre_GI Gene

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Host: NC_004129 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004129:2034500 Pseudomonas fluorescens Pf-5, complete genome

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
203477620359811206acetyl-CoA acetyltransferaseQuickGO ontologyBLASTP
203600720381512145fatty oxidation complex alpha subunitQuickGO ontologyBLASTP
20382572038979723amidotransferaseQuickGO ontologyBLASTP
20390232039994972magnesiumcobalt transporter MIT familyQuickGO ontologyBLASTP
204014020408627231-acyl-sn-glycerol-3-phosphate acyltransferaseQuickGO ontologyBLASTP
20410812041770690enoyl-CoA hydrataseQuickGO ontologyBLASTP
2042089204217890tRNA-SerQuickGO ontologyBLASTP
204278420445471764ATPGTP-binding protein putativeQuickGO ontologyBLASTP
20447972045261465integraseQuickGO ontologyBLASTP
20460232046211189hypothetical protein
204605020472221173hypothetical proteinBLASTP
204741120493871977hypothetical proteinBLASTP
20518482052288441lipoprotein putativeQuickGO ontology
20531622053323162hypothetical protein
20534762054171696HAD-superfamily hydrolaseQuickGO ontologyBLASTP
20542552055001747short chain dehydrogenaseQuickGO ontologyBLASTP
20551252056048924transcriptional regulator LysR familyQuickGO ontologyBLASTP
20560852056813729hydantoin racemaseQuickGO ontologyBLASTP
205686920584101542transporter NCS1 nucleoside transporter familyQuickGO ontologyBLASTP
20589002059634735phosphoadenosine phosphosulfate reductaseQuickGO ontologyBLASTP
20598102060427618phosphoserine phosphatasehomoserine phosphotransferase bifunctional proteinQuickGO ontologyBLASTP
206055620619171362para-aminobenzoate synthase component IQuickGO ontologyBLASTP
20620762063062987hypothetical proteinBLASTP
206306220645941533hypothetical proteinBLASTP