Pre_GI: BLASTP Hits

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Query: NC_004129:2034500:2038257 Pseudomonas fluorescens Pf-5, complete genome

Start: 2038257, End: 2038979, Length: 723

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016830:4809210:482728048272804828014735Pseudomonas fluorescens F113 chromosome, complete genomeglutamine amidotransferase2e-127455
NC_012660:5121219:513808051380805138805726Pseudomonas fluorescens SBW25 chromosome, complete genomeamidotransferase2e-118424
NC_012988:670101:670101670101670793693Methylobacterium extorquens DM4, complete genomeglutamine amidotransferase, class-I family protein1e-40166
NC_008343:61191:742217422174946726Granulibacter bethesdensis CGDNIH1, complete genomeGMP synthase (glutamine-hydrolyzing)6e-37154
NC_009049:2131017:213901221390122139689678Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequenceglutamine amidotransferase class-I6e-23107
NC_009675:4281249:428518242851824285892711Anaeromyxobacter sp. Fw109-5 chromosome, complete genomeglutamine amidotransferase3e-1789
NC_011768:5631288:563601056360105636729720Desulfatibacillum alkenivorans AK-01, complete genomeglutamine amidotransferase class-I4e-1375.1
NC_015565:2827444:284827928482792849007729Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeglutamine amidotransferase class-I1e-1273.6
NC_012470:1061392:1064515106451510660771563Streptococcus equi subsp. zooepidemicus, complete genomeGMP synthase [glutamine-hydrolyzing]1e-1170.1
NC_013895:1203000:1214103121410312156801578Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completeGMP synthase (glutamine-hydrolyzing)4e-1168.2
NC_008593:2136759:2139825213982521413631539Clostridium novyi NT, complete genomeGMP synthase4e-1168.2
NC_016816:2782373:278504827850482785770723Pantoea ananatis LMG 5342, complete genomeglutamine amidotransferase3e-1065.9
NC_015425:2389400:2396428239642823979811554Clostridium botulinum BKT015925 chromosome, complete genomeGMP synthase large subunit5e-1064.7
NC_014205:17445:3010330103316921590Staphylothermus hellenicus DSM 12710 chromosome, complete genomeGMP synthase, large subunit7e-1064.3
NC_010001:312500:3297753297753312981524Clostridium phytofermentans ISDg, complete genomeGMP synthase, large subunit1e-0963.5
NC_021175:881845:9081709081709097291560Streptococcus oligofermentans AS 1.3089, complete genomeGMP synthase2e-0963.2
NC_015958:677500:6899676899676915051539Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genomeGMP synthase2e-0962.8
NC_007645:4651532:465693446569344657671738Hahella chejuensis KCTC 2396, complete genomeGMP synthase2e-0962.4
NC_003295:199354:235682235682236398717Ralstonia solanacearum GMI1000, complete genomeglutamine amidotransferase5e-0961.6
NC_016023:1658377:1665015166501516665681554Bacillus coagulans 36D1 chromosome, complete genomeGMP synthase large subunit5e-0961.6
NC_017271:149856:177240177240178004765Xanthomonas campestris pv. raphani 756C chromosome, completeGMP synthase7e-0960.8
NC_013204:1135397:1145707114570711473141608Eggerthella lenta DSM 2243, complete genomeGMP synthase, large subunit7e-0960.8
NC_011567:238249:2423692423692439041536Anoxybacillus flavithermus WK1, complete genomeGMP synthetase1e-0860.1
NC_002678:5060670:506850850685085069350843Mesorhizobium loti MAFF303099, complete genomehypothetical protein2e-0859.7
NC_002758:434462:4344624344624360031542Staphylococcus aureus subsp. aureus Mu50, complete genomebifunctional GMP synthase/glutamine amidotransferase protein2e-0859.7
NC_010162:5129270:5147267514726751488411575Sorangium cellulosum 'So ce 56', complete genomeGMP synthase1e-0859.7
NC_008054:245184:2529122529122544651554Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completeGMP synthase2e-0859.3
NC_015634:2779392:2795308279530827968611554Bacillus coagulans 2-6 chromosome, complete genomeGMP synthase, large subunit2e-0859.3
NC_018876:1061682:106474510647451065464720Methanolobus psychrophilus R15 chromosome, complete genomeGMP synthase2e-0859.3
NC_017208:256163:2651672651672667051539Bacillus thuringiensis serovar chinensis CT-43 chromosome, completebifunctional GMP synthase/glutamine amidotransferase protein2e-0859.3
NC_014507:2319842:233474623347462335438693Methanoplanus petrolearius DSM 11571 chromosome, complete genomeclass I glutamine amidotransferase3e-0858.9
NC_002607:169721:192826192826193377552Halobacterium sp. NRC-1, complete genomeGMP synthase subunit A3e-0858.9
NC_009720:464078:4871734871734887471575Xanthobacter autotrophicus Py2, complete genomeGMP synthase3e-0858.9
NC_014171:261952:2660322660322674321401Bacillus thuringiensis BMB171 chromosome, complete genomebifunctional GMP synthase/glutamine amidotransferase3e-0858.9
NC_013203:202008:2234352234352250241590Atopobium parvulum DSM 20469, complete genomeGMP synthase, large subunit3e-0858.5
NC_015738:2652500:2656769265676926584121644Eggerthella sp. YY7918, complete genomehypothetical protein5e-0858.2
NC_007963:814148:8200848200848216611578Chromohalobacter salexigens DSM 3043, complete genomeGMP synthase6e-0857.8
NC_012214:1212616:1215706121570612172861581Erwinia pyrifoliae Ep1/96, complete genomeGMP synthase [glutamine-hydrolyzing]6e-0857.8
NC_012883:38308:427164271643282567Thermococcus sibiricus MM 739, complete genomeGMP synthase [glutamine-hydrolyzing] subunit A6e-0857.8
NC_021182:1473535:1493855149385514953871533Clostridium pasteurianum BC1, complete genomeGMP synthase (glutamine-hydrolyzing)8e-0857.4
NC_020064:3517500:3531504353150435330811578Serratia marcescens FGI94, complete genomeGMP synthase (glutamine-hydrolyzing)8e-0857.4
NC_015562:1708000:172514117251411725710570Methanotorris igneus Kol 5 chromosome, complete genomeGMP synthase subunit A1e-0757
NC_005126:3204980:3213917321391732154941578Photorhabdus luminescens subsp. laumondii TTO1, complete genomebifunctional GMP synthase/glutamine amidotransferase protein1e-0757
NC_015873:1411718:1413387141338714149221536Megasphaera elsdenii DSM 20460, complete genomeGMP synthase [glutamine-hydrolyzing]1e-0756.6
NC_016791:2983349:3008958300895830104931536Clostridium sp. BNL1100 chromosome, complete genomeGMP synthase2e-0756.2
NC_012918:928903:9308119308119323611551Geobacter sp. M21 chromosome, complete genomeGMP synthase2e-0756.2
NC_014500:3519722:3533911353391135354881578Dickeya dadantii 3937 chromosome, complete genomeGMP synthetase (glutamine aminotransferase)2e-0756.2
NC_011027:817311:817311817311818030720Chlorobaculum parvum NCIB 8327, complete genomeglutamine amidotransferase class-I3e-0755.8
NC_012912:1295653:1299900129990013014771578Dickeya zeae Ech1591, complete genomeGMP synthase, large subunit2e-0755.8
NC_014160:719408:7414467414467430111566Thermosphaera aggregans DSM 11486 chromosome, complete genomeGMP synthase2e-0755.8
NC_015275:3594890:3605328360532836068691542Clostridium lentocellum DSM 5427 chromosome, complete genomeGMP synthase, large subunit2e-0755.8
NC_007681:1455425:147614814761481476708561Methanosphaera stadtmanae DSM 3091, complete genomeGMP synthase [glutamine hydrolyzing], subunit A3e-0755.5
NC_014633:8500:87978797103351539Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequenceGMP synthase3e-0755.5
NC_011146:896000:9010229010229025721551Geobacter bemidjiensis Bem, complete genomeGMP synthase, large subunit3e-0755.5
NC_015416:1039144:105845810584581059159702Methanosaeta concilii GP-6 chromosome, complete genomeglutamine amidotransferase class-I6e-0754.7
NC_012779:3016327:3033546303354630351231578Edwardsiella ictaluri 93-146, complete genomeGMP synthase6e-0754.7
NC_017095:269165:2691652691652707121548Fervidobacterium pennivorans DSM 9078 chromosome, complete genomeGMP synthase5e-0754.7
NC_009381:2491427:2503680250368025052571578Yersinia pestis Pestoides F chromosome, complete genomeGMP synthase7e-0754.3
NC_010159:409500:4221934221934237701578Yersinia pestis Angola, complete genomeGMP synthase7e-0754.3
NC_008149:1440371:1444909144490914464861578Yersinia pestis Nepal516, complete genomeGMP synthase7e-0754.3
NC_004088:1510467:1514989151498915165661578Yersinia pestis KIM, complete genomebifunctional GMP synthase/glutamine amidotransferase protein7e-0754.3
NC_003143:3191246:3203461320346132050381578Yersinia pestis CO92, complete genomebifunctional GMP synthase/glutamine amidotransferase protein7e-0754.3
NC_008150:2574794:2587010258701025885871578Yersinia pestis Antiqua, complete genomeputative GMP synthase7e-0754.3
NC_005810:3021913:3034466303446630360431578Yersinia pestis biovar Microtus str. 91001, complete genomebifunctional GMP synthase/glutamine amidotransferase protein7e-0754.3
NC_015636:1061736:107749610774961078065570Methanothermococcus okinawensis IH1 chromosome, complete genomeGMP synthase subunit A7e-0754.3
NC_019978:315346:3242173242173257671551Halobacteroides halobius DSM 5150, complete genomeGMP synthase (glutamine-hydrolyzing)8e-0754.3
NC_014029:3171627:3176149317614931777261578Yersinia pestis Z176003 chromosome, complete genomebifunctional GMP synthase/glutamine amidotransferase protein7e-0754.3
NC_017154:2876545:2888705288870528902821578Yersinia pestis D106004 chromosome, complete genomebifunctional GMP synthase/glutamine amidotransferase protein7e-0754.3
NC_017160:3094768:3101116310111631026931578Yersinia pestis D182038 chromosome, complete genomebifunctional GMP synthase/glutamine amidotransferase protein7e-0754.3
NC_012673:2152639:2154974215497421565151542Exiguobacterium sp. AT1b, complete genomeGMP synthase, large subunit6e-0754.3
NC_016632:1278500:1284083128408312856841602Serratia symbiotica str. 'Cinara cedri' chromosome, completeGMP synthase7e-0754.3
NC_007604:1586243:159593415959341596614681Synechococcus elongatus PCC 7942, complete genomeprobable amidotransferase7e-0754.3
NC_009708:1403434:1407939140793914095161578Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeGMP synthase7e-0754.3
NC_010465:1427170:1433531143353114351081578Yersinia pseudotuberculosis YPIII, complete genomeGMP synthase, large subunit7e-0754.3
NC_006155:3333303:3345011334501133465881578Yersinia pseudotuberculosis IP 32953, complete genomebifunctional GMP synthase/glutamine amidotransferase protein7e-0754.3
NC_010634:3250810:3262495326249532640721578Yersinia pseudotuberculosis PB1/+, complete genomeGMP synthase, large subunit7e-0754.3
NC_017265:2940539:2953958295395829555351578Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,GMP synthase7e-0754.3
NC_017168:2535732:2547947254794725495241578Yersinia pestis A1122 chromosome, complete genomeGMP synthase7e-0754.3
NC_020063:1194000:1198932119893212005091578Enterobacteriaceae bacterium strain FGI 57, complete genomeGMP synthase (glutamine-hydrolyzing)1e-0653.9
NC_011283:1307173:1307173130717313087501578Klebsiella pneumoniae 342 chromosome, complete genomeGMP synthase1e-0653.9
NC_007604:168176:1875311875311892581728Synechococcus elongatus PCC 7942, complete genomeGMP synthase1e-0653.9
NC_012917:3378759:3386559338655933881361578Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeGMP synthase, large subunit9e-0753.9
NC_014532:722151:7261007261007278691770Halomonas elongata DSM 2581, complete genomebifunctional GMP synthase/glutamine amidotransferase protein9e-0753.9
NC_013956:3181421:3192808319280831943881581Pantoea ananatis LMG 20103 chromosome, complete genomeGuaA9e-0753.9
NC_006576:2683467:269315926931592693839681Synechococcus elongatus PCC 6301, complete genomeprobable amidotransferase8e-0753.9
NC_009848:582775:5863665863665879071542Bacillus pumilus SAFR-032, complete genomebifunctional GMP synthase/glutamine amidotransferase protein1e-0653.5
NC_004741:2593012:2613999261399926155761578Shigella flexneri 2a str. 2457T, complete genomebifunctional GMP synthase/glutamine amidotransferase protein1e-0653.5
NC_011297:1357947:1368020136802013695431524Dictyoglomus thermophilum H-6-12, complete genomeGMP synthase (glutamine-hydrolyzing)1e-0653.5
NC_015964:1389628:1390779139077913923381560Haemophilus parainfluenzae T3T1, complete genomeGMP synthetase1e-0653.5
NC_015177:2271499:2271499227149922730311533Pedobacter saltans DSM 12145 chromosome, complete genomeGMP synthase, large subunit1e-0653.5
NC_009800:2651730:2668598266859826701751578Escherichia coli HS, complete genomeGMP synthase (glutamine-hydrolyzing)2e-0653.1
NC_014973:4174668:4199478419947842010281551Geobacter sp. M18 chromosome, complete genomeGMP synthase large subunit1e-0653.1
NC_015977:2807782:2836172283617228377821611Roseburia hominis A2-183 chromosome, complete genomeGMP synthase1e-0653.1
NC_008781:2108893:2124230212423021258521623Polaromonas naphthalenivorans CJ2, complete genomeGMP synthase, large subunit1e-0653.1
NC_015672:1921023:1931794193179419333441551Flexistipes sinusarabici DSM 4947 chromosome, complete genomeGMP synthase2e-0652.8
NC_014472:3785319:3808737380873738102691533Flavobacteriales bacterium HTCC2170 chromosome, complete genomebifunctional GMP synthase/glutamine amidotransferase protein4e-0652
NC_006905:2630000:2643546264354626451231578Salmonella enterica subsp. enterica serovar Choleraesuis strbifunctional GMP synthase/glutamine amidotransferase protein4e-0652
NC_009464:2372607:237372123737212374290570Uncultured methanogenic archaeon RC-I, complete genomeGMP synthase, glutamine-hydrolyzing5e-0651.6
NC_000868:757823:759774759774760340567Pyrococcus abyssi GE5, complete genomeGMP synthase subunit A5e-0651.6
NC_016629:2561000:256216325621632562852690Desulfovibrio africanus str. Walvis Bay chromosome, completeglutamine amidotransferase9e-0650.8