Pre_GI: BLASTP Hits

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Query: NC_004129:2034500:2044797 Pseudomonas fluorescens Pf-5, complete genome

Start: 2044797, End: 2045261, Length: 465

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015410:2351464:2364894236489423660601167Pseudomonas mendocina NK-01 chromosome, complete genomephage integrase6e-34142
NC_007963:1552761:1553528155352815546941167Chromohalobacter salexigens DSM 3043, complete genomephage integrase2e-32137
NC_004603:2235142:2246231224623122473431113Vibrio parahaemolyticus RIMD 2210633 chromosome I, completeputative pore-forming cytotoxin integrase9e-23105
NC_017986:4091051:4097376409737640986471272Pseudomonas putida ND6 chromosome, complete genomeintegrase family protein3e-22103
NC_014965:2200974:2207072220707222083791308Vibrio vulnificus MO6-24/O chromosome I, complete sequencehypothetical protein8e-1682.4
NC_015740:2998500:300989430098943010136243Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeintegrase family protein2e-1168.2
NC_012559:854507:8724628724628737121251Laribacter hongkongensis HLHK9, complete genomePhage integrase4e-1167
NC_014922:1360000:1373300137330013744451146Haemophilus influenzae F3047 chromosome, complete genomehypothetical protein2e-1064.3
NC_010943:1938136:1947488194748819486631176Stenotrophomonas maltophilia K279a, complete genomeputative phage integrase protein3e-1063.9
NC_016612:3314846:3318797331879733200831287Klebsiella oxytoca KCTC 1686 chromosome, complete genomehypothetical protein3e-1063.9
NC_013961:1891000:190234319023431903047705Erwinia amylovora, complete genomeTransposase A from transposon Tn5543e-1063.9
NC_013971:1927510:193987019398701940574705Erwinia amylovora ATCC 49946 chromosome, complete genomeintegrase (partial)3e-1063.9
NC_014500:842493:8599108599108610851176Dickeya dadantii 3937 chromosome, complete genomeIntegrase7e-1062.8
NC_009648:1541699:1542683154268315439211239Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative transposase/integrase8e-1062.8
AC_000091:1627049:1653226165322616544221197Escherichia coli W3110 DNA, complete genomepredicted defective integrase1e-0962.4
NC_016902:2305659:2306866230686623081461281Escherichia coli KO11FL chromosome, complete genomeintegrase family protein1e-0962.4
CP002516:2305659:2306866230686623081461281Escherichia coli KO11, complete genomeintegrase family protein1e-0962.4
NC_012967:1403733:1409170140917014104051236Escherichia coli B str. REL606 chromosome, complete genomeintegrase1e-0962.4
NC_012947:2366000:2383979238397923852141236Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeintegrase1e-0962.4
CP002516:2580774:2604076260407626053111236Escherichia coli KO11, complete genomeintegrase family protein1e-0962.4
AC_000091:1407693:1413714141371414149491236Escherichia coli W3110 DNA, complete genomeintegrase1e-0962.4
CP002185:1493280:1500539150053915017741236Escherichia coli W, complete genomeRac prophage; integrase1e-0962.4
NC_000913:1404000:1410024141002414112591236Escherichia coli K12, complete genomeRac prophage; integrase1e-0962.4
NC_010473:1493983:1499420149942015006551236Escherichia coli str. K-12 substr. DH10B, complete genomeRac prophage integrase1e-0962.4
NC_011415:1472500:1475428147542814766631236Escherichia coli SE11 chromosome, complete genomeputative phage integrase1e-0962.4
NC_012759:1296000:1302083130208313033181236Escherichia coli BW2952 chromosome, complete genomeRac prophage; integrase1e-0962.4
NC_016902:2580774:2604076260407626053111236Escherichia coli KO11FL chromosome, complete genomeintegrase family protein1e-0962.4
NC_000913:1625500:1649536164953616507321197Escherichia coli K12, complete genomeQin prophage; predicted defective integrase1e-0962
NC_013446:1724000:1738058173805817392421185Comamonas testosteroni CNB-2, complete genomephage integrase1e-0962
NC_014121:2745097:2759664275966427609561293Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein3e-0960.8
NC_013361:3651150:3656440365644036576151176Escherichia coli O26:H11 str. 11368 chromosome, complete genomeintegrase3e-0960.8
NC_015733:2720183:2744616274461627458001185Pseudomonas putida S16 chromosome, complete genomephage integrase3e-0960.8
NC_009801:1756610:1777435177743517787151281Escherichia coli E24377A, complete genomesite-specific recombinase, phage integrase family4e-0960.5
NC_007946:2931364:2939949293994929411211173Escherichia coli UTI89, complete genomehypothetical protein7e-0959.7
NC_008563:2946391:2954976295497629561481173Escherichia coli APEC O1, complete genomehypothetical protein7e-0959.7
NC_011742:2863316:2872287287228728734591173Escherichia coli S88 chromosome, complete genomehypothetical protein7e-0959.7
NC_013364:1183000:1183584118358411848941311Escherichia coli O111:H- str. 11128, complete genomeputative integrase1e-0858.9
NC_013941:3300000:3310496331049633116801185Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein1e-0858.9
NC_013716:2764550:2771293277129327724591167Citrobacter rodentium ICC168, complete genomeputative phage integrase1e-0858.5
NC_013361:1558423:1558998155899815603081311Escherichia coli O26:H11 str. 11368 chromosome, complete genomeintegrase2e-0858.5
NC_020181:5130513:5161985516198551631511167Enterobacter aerogenes EA1509E, complete genomePhage integrase3e-0857.8
NC_020063:2449554:2464493246449324655031011Enterobacteriaceae bacterium strain FGI 57, complete genome3e-0857.8
NC_015572:427732:453825453825454112288Methylomonas methanica MC09 chromosome, complete genome2e-0857.8
NC_012917:2641000:265608626560862656853768Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeintegrase family protein4e-0857
NC_015731:2811579:2817781281778128188661086Nitrosomonas sp. Is79A3 chromosome, complete genomeintegrase family protein4e-0857
NC_014910:1765065:177180517718051772131327Alicycliphilus denitrificans BC chromosome, complete genome6e-0856.6
NC_010102:1829357:1836497183649718377891293Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein8e-0855.8
NC_021066:2226826:2249897224989722511861290Raoultella ornithinolytica B6, complete genomeInt protein9e-0855.8
NC_002927:3716894:3762261376226137634841224Bordetella bronchiseptica RB50, complete genomephage integrase4e-0753.9
NC_010645:1496816:1496816149681614979341119Bordetella avium 197N, complete genomephage integrase5e-0753.5
NC_013850:2182337:2184415218441521856621248Klebsiella variicola At-22 chromosome, complete genomeintegrase family protein6e-0753.1
NC_009778:1556222:1561010156101015622931284Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein1e-0652
NC_020260:1615135:1619923161992316212061284Cronobacter sakazakii Sp291, complete genomehypothetical protein1e-0652
NC_009943:305854:3313733313733325841212Candidatus Desulfococcus oleovorans Hxd3, complete genomeintegrase family protein2e-0651.6
NC_016514:2387312:2410532241053224118181287Enterobacter cloacae EcWSU1 chromosome, complete genomelambdoid prophage Rac integrase2e-0651.6
NC_007298:1418500:1441002144100214422371236Dechloromonas aromatica RCB, complete genomePhage integrase2e-0651.2