Pre_GI: BLASTP Hits

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Query: NC_004129:2034500:2042089 Pseudomonas fluorescens Pf-5, complete genome

Start: 2042089, End: 2042178, Length: 90

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016830:4809210:48237234823723482380987Pseudomonas fluorescens F113 chromosome, complete genometRNA-Ser2e-0858.2
NC_007005:2149275:21619072161907216199690Pseudomonas syringae pv. syringae B728a, complete genometRNA-Ser5e-0856.6
NC_009439:2337024:23382122338212233830190Pseudomonas mendocina ymp, complete genometRNA-Ser6e-0856.2
NC_012660:5121219:51349375134937513502387Pseudomonas fluorescens SBW25 chromosome, complete genometRNA-Ser7e-0855.8
NC_012912:1788308:18170891817089181717890Dickeya zeae Ech1591, complete genometRNA-Ser1e-0755.5
NC_013592:1730505:17543831754383175447290Dickeya dadantii Ech586, complete genometRNA-Ser1e-0755.5
NC_015410:2838132:28601222860122286020887Pseudomonas mendocina NK-01 chromosome, complete genometRNA-Ser3e-0753.9
NC_014500:3023762:30311823031182303127190Dickeya dadantii 3937 chromosome, complete genometRNA-Ser8e-0752.4
NC_010465:2383219:24039662403966240405590Yersinia pseudotuberculosis YPIII, complete genometRNA-Ser2e-0651.2
NC_009381:1205900:12266101226610122669990Yersinia pestis Pestoides F chromosome, complete genometRNA-Ser2e-0651.2
NC_014029:2285323:23060852306085230617490Yersinia pestis Z176003 chromosome, complete genometRNA-Ser2e-0651.2
NC_017160:2212806:22335852233585223367490Yersinia pestis D182038 chromosome, complete genometRNA-Ser2e-0651.2
NC_017168:3433804:34543933454393345448290Yersinia pestis A1122 chromosome, complete genometRNA-Ser2e-0651.2
NC_017265:2213500:22337612233761223385090Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,tRNA-Ser2e-0651.2
NC_017047:1796000:17966461796646179673590Rahnella aquatilis HX2 chromosome, complete genometRNA-Ser6e-0649.7
NC_017047:1796000:17960761796076179616590Rahnella aquatilis HX2 chromosome, complete genometRNA-Ser6e-0649.7
NC_015703:3842144:38572773857277385736690Runella slithyformis DSM 19594 chromosome, complete genometRNA-Ser1e-0548.9