Pre_GI: BLASTP Hits

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Query: NC_004129:2034500:2041081 Pseudomonas fluorescens Pf-5, complete genome

Start: 2041081, End: 2041770, Length: 690

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016830:4809210:482411848241184824807690Pseudomonas fluorescens F113 chromosome, complete genomeEnoyl-CoA hydratase/isomerase family protein4e-116417
NC_012660:5121219:513534451353445136036693Pseudomonas fluorescens SBW25 chromosome, complete genomeenoyl-CoA hydratase3e-106384
NC_009439:2337024:233702423370242337713690Pseudomonas mendocina ymp, complete genomeenoyl-CoA hydratase3e-104377
NC_015410:2838132:286070628607062861395690Pseudomonas mendocina NK-01 chromosome, complete genomeenoyl-CoA hydratase3e-101367
NC_007005:2149275:215037021503702151059690Pseudomonas syringae pv. syringae B728a, complete genomeenoyl-CoA hydratase7e-101366
NC_014472:3530274:354031935403193541092774Flavobacteriales bacterium HTCC2170 chromosome, complete genomehypothetical protein4e-1684.7
NC_015563:4206112:421556942155694216345777Delftia sp. Cs1-4 chromosome, complete genomeenoyl-CoA hydratase/isomerase2e-1479.3
NC_020829:4429435:4439128443912844412392112Pseudomonas denitrificans ATCC 13867, complete genomeshort chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase3e-1272
NC_007503:1111457:115099311509931151766774Carboxydothermus hydrogenoformans Z-2901, complete genome3-hydroxybutyryl-CoA dehydratase7e-1270.9
NC_010516:3466000:347929234792923480074783Clostridium botulinum B1 str. Okra, complete genome3-hydroxybutyryl-CoA dehydratase3e-1065.1
NC_015312:681678:702173702173702925753Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeenoyl-CoA hydratase/isomerase5e-1064.7
NC_007333:1743890:178047017804701781141672Thermobifida fusca YX, complete genomeputative enoyl-CoA hydratase/isomerase family protein6e-1064.3
NC_009698:3275839:328407632840763284858783Clostridium botulinum A str. Hall chromosome, complete genome3-hydroxybutyryl-CoA dehydratase6e-1064.3
NC_002754:1811500:183162918316291832441813Sulfolobus solfataricus P2, complete genomeEnoyl CoA hydratase (paaF-4)1e-0963.5
NC_015976:814922:834922834922835755834Sphingobium sp. SYK-6, complete genomeferuloyl-CoA hydratase/lyase1e-0963.2
NC_008740:1635137:163885616388561639647792Marinobacter aquaeolei VT8, complete genomeEnoyl-CoA hydratase/isomerase3e-0962.4
NC_003911:1791878:179441717944171795202786Silicibacter pomeroyi DSS-3, complete genomeenoyl-CoA hydratase3e-0962
NC_013892:114884:125205125205125978774Xenorhabdus bovienii SS-2004 chromosome, complete genomeenoyl-CoA hydratase-isomerase, phenylacetic acid degradation (strain W)5e-0961.2
NC_010505:5525461:557145755714575572278822Methylobacterium radiotolerans JCM 2831, complete genomeEnoyl-CoA hydratase/isomerase1e-0860.1
NC_012726:701067:718891718891719694804Sulfolobus islandicus M.16.4 chromosome, complete genomeEnoyl-CoA hydratase/isomerase1e-0860.1
NC_011768:79297:829568295683726771Desulfatibacillum alkenivorans AK-01, complete genomeEnoyl-CoA hydratase/isomerase1e-0859.7
NC_014220:481923:492703492703493482780Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomeEnoyl-CoA hydratase/isomerase2e-0859.7
NC_016048:2678205:271478227147822715558777Oscillibacter valericigenes Sjm18-20, complete genome3-hydroxybutyryl-CoA dehydratase2e-0859.3
NC_011969:4235818:424419442441944244970777Bacillus cereus Q1 chromosome, complete genomeenoyl-CoA hydratase3e-0858.9
NC_011658:4301633:431136543113654312141777Bacillus cereus AH187 chromosome, complete genomeenoyl-CoA hydratase3e-0858.9
NC_005957:4311679:432141143214114322187777Bacillus thuringiensis serovar konkukian str. 97-27, completeenoyl-CoA hydratase3e-0858.9
NC_008687:133728:138930138930139730801Paracoccus denitrificans PD1222 chromosome 2, complete sequenceEnoyl-CoA hydratase/isomerase4e-0858.2
NC_021182:1473535:147941914794191480207789Clostridium pasteurianum BC1, complete genomeenoyl-CoA hydratase/carnithine racemase7e-0857.4
NC_011958:53426:542965429655081786Rhodobacter sphaeroides KD131 chromosome 2, complete genomeEnoyl-CoA hydratase/isomerase1e-0757
NC_007494:27084:294372943730222786Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequenceenoyl-CoA hydratase1e-0757
NC_013791:2273389:228191722819172282699783Bacillus pseudofirmus OF4 chromosome, complete genomeenoyl-CoA hydratase9e-0857
NC_018681:867230:8708318708318729872157Nocardia brasiliensis ATCC 700358 chromosome, complete genomeacyl-CoA dehydrogenase1e-0756.6
NC_009720:1006201:1027725102772510297852061Xanthobacter autotrophicus Py2, complete genome3-hydroxyacyl-CoA dehydrogenase NAD-binding3e-0755.8
NC_014118:1083492:110560411056041106404801Burkholderia sp. CCGE1002 chromosome chromosome 2, completeEnoyl-CoA hydratase/isomerase3e-0755.5
NC_014729:1185294:1190375119037511923541980Halogeometricum borinquense DSM 11551 chromosome, complete genome3-hydroxyacyl-CoA dehydrogenase; short chain enoyl-CoA hydratase3e-0755.5
NC_019974:3567164:358029935802993581078780Natronococcus occultus SP4, complete genomeenoyl-CoA hydratase/carnithine racemase3e-0755.5
NC_008262:2498000:251139525113952512177783Clostridium perfringens SM101, complete genome3-hydroxybutyryl-CoA dehydratase5e-0754.7
NC_009454:489954:506609506609507391783Pelotomaculum thermopropionicum SI, complete genomeenoyl-CoA hydratase/carnithine racemase9e-0753.9
NC_015576:3976679:403398640339864034756771Mycobacterium sp. JDM601 chromosome, complete genomeenoyl-CoA hydratase EchA89e-0753.9
NC_015738:1925997:193751919375191938304786Eggerthella sp. YY7918, complete genomehypothetical protein8e-0753.9
NC_009050:604950:607303607303608088786Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequenceEnoyl-CoA hydratase/isomerase1e-0653.5
NC_015573:813000:851779851779852561783Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genome3-hydroxybutyryl-CoA dehydratase1e-0653.1
NC_003364:1463317:148142114814211482269849Pyrobaculum aerophilum str. IM2, complete genomeenoyl-CoA hydratase1e-0653.1
NC_014228:4408500:441474944147494415522774Xenorhabdus nematophila ATCC 19061, complete genomeenoyl-CoA hydratase-isomerase, phenylacetic acid degradation (strain W)2e-0653.1
NC_017904:2641270:264678226467822647450669Mycobacterium sp. MOTT36Y chromosome, complete genomeenoyl-CoA hydratase2e-0652.8
NC_010718:1959517:196499319649931965781789Natranaerobius thermophilus JW/NM-WN-LF, complete genomeshort chain enoyl-CoA hydratase2e-0652.8
NC_015458:3390674:3399313339931334014032091Pusillimonas sp. T7-7 chromosome, complete genomefatty oxidation complex, alpha subunit3e-0652.4
NC_017506:1832443:183528518352851836106822Marinobacter adhaerens HP15 chromosome, complete genomeenoyl-CoA hydratase/isomerase4e-0651.6
NC_014315:2485527:2485527248552724875452019Nitrosococcus watsoni C-113 chromosome, complete genome3-hydroxyacyl-CoA dehydrogenase NAD-binding protein4e-0651.6
NC_015425:1687050:169778016977801698565786Clostridium botulinum BKT015925 chromosome, complete genomeenoyl-CoA hydratase/isomerase4e-0651.6
NC_003106:91339:9133991339932971959Sulfolobus tokodaii str. 7, complete genomehypothetical 3-hydroxybutyryl-CoA dehydrogenase4e-0651.6
NC_012588:2483000:250205625020562502853798Sulfolobus islandicus M.14.25 chromosome, complete genomeenoyl-CoA hydratase/isomerase6e-0651.2
NC_012632:2564801:258614925861492586946798Sulfolobus islandicus M.16.27 chromosome, complete genomeEnoyl-CoA hydratase/isomerase6e-0651.2
NC_012726:2461102:248245024824502483247798Sulfolobus islandicus M.16.4 chromosome, complete genomeEnoyl-CoA hydratase/isomerase6e-0651.2
NC_010545:2229125:224812622481262249013888Corynebacterium urealyticum DSM 7109, complete genomeenoyl-CoA hydratase/isomerase family protein6e-0651.2
NC_012623:2555000:2572971257297125749621992Sulfolobus islandicus Y.N.15.51 chromosome, complete genome3-hydroxyacyl-CoA dehydrogenase5e-0651.2
NC_012589:260703:2791892791892811801992Sulfolobus islandicus L.S.2.15, complete genome3-hydroxyacyl-CoA dehydrogenase NAD-binding7e-0650.8
NC_017275:2519637:254098525409852541782798Sulfolobus islandicus HVE10/4 chromosome, complete genomeenoyl-CoA hydratase/isomerase7e-0650.8
NC_012522:7871173:787117378711737871994822Rhodococcus opacus B4, complete genomeenoyl-CoA hydratase8e-0650.8
NC_013421:1545386:1565480156548015676632184Pectobacterium wasabiae WPP163, complete genomefatty acid oxidation complex, alpha subunit FadJ9e-0650.4
NC_008687:45967:674296742968199771Paracoccus denitrificans PD1222 chromosome 2, complete sequenceEnoyl-CoA hydratase/isomerase9e-0650.4