Pre_GI: BLASTP Hits

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Query: NC_004129:2034500:2056869 Pseudomonas fluorescens Pf-5, complete genome

Start: 2056869, End: 2058410, Length: 1542

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012660:5121219:5121219512121951227481530Pseudomonas fluorescens SBW25 chromosome, complete genomeputative allantoin permease0869
NC_020210:2133996:2195727219572721972141488Geobacillus sp. GHH01, complete genomeallantoin permease1e-106387
NC_013850:2624899:2624899262489926263951497Klebsiella variicola At-22 chromosome, complete genomepermease for cytosine/purines uracil thiamine allantoin1e-95350
NC_011283:2627050:2627050262705026285461497Klebsiella pneumoniae 342 chromosome, complete genomepermease, cytosine/purine, uracil, thiamine, allantoin family2e-95350
NC_016830:1719407:1740066174006617415201455Pseudomonas fluorescens F113 chromosome, complete genomecytosine/purines uracil thiamine allantoin permease3e-95349
NC_008149:3251196:3272149327214932736331485Yersinia pestis Nepal516, complete genomepermease6e-94345
NC_009381:1783886:1824815182481518262991485Yersinia pestis Pestoides F chromosome, complete genomepermease6e-94345
NC_012731:2693091:2705755270575527072511497Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative allantoin permease5e-94345
NC_009648:1956070:1972135197213519736311497Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative allantoin permease4e-94345
NC_016845:2729654:2747899274789927493951497Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative allantoin permease3e-94345
NC_016514:1627664:1647095164709516485911497Enterobacter cloacae EcWSU1 chromosome, complete genomeallantoin permease1e-93343
NC_015968:1618862:1639779163977916412751497Enterobacter asburiae LF7a chromosome, complete genomepermease for cytosine/purines uracil thiamine allantoin4e-93342
NC_016906:4123000:4137444413744441391021659Gordonia polyisoprenivorans VH2 chromosome, complete genomeputative allantoin permease, nucleobase cation symporter-1 (NCS1) family2e-92339
NC_004088:3382148:3403208340320834045661359Yersinia pestis KIM, complete genomepermease4e-84312
NC_016582:3763476:3780331378033137818931563Streptomyces bingchenggensis BCW-1 chromosome, complete genomeallantoin permease6e-65248
NC_013209:2337204:2365296236529623665191224Acetobacter pasteurianus IFO 3283-01, complete genomeAPC transporter NCS11e-62240
NC_017100:2339826:2367918236791823691411224Acetobacter pasteurianus IFO 3283-03, complete genomeAPC transporter NCS11e-62240
NC_017108:2337163:2365255236525523664781224Acetobacter pasteurianus IFO 3283-12, complete genomeAPC transporter NCS11e-62240
NC_017111:2337181:2365273236527323664961224Acetobacter pasteurianus IFO 3283-32, complete genomeAPC transporter NCS11e-62240
NC_017121:2337168:2365260236526023664831224Acetobacter pasteurianus IFO 3283-07, complete genomeAPC transporter NCS11e-62240
NC_017125:2339806:2367898236789823691211224Acetobacter pasteurianus IFO 3283-22, complete genomeAPC transporter NCS11e-62240
NC_017146:2339848:2367940236794023691631224Acetobacter pasteurianus IFO 3283-26, complete genomeAPC transporter NCS11e-62240
NC_017150:2244950:2273042227304222742651224Acetobacter pasteurianus IFO 3283-01-42C, complete genomeAPC transporter NCS11e-62240
NC_021182:1077721:1088364108836410898481485Clostridium pasteurianum BC1, complete genomeNCS1 nucleoside transporter-like protein4e-62239
NC_015563:4383000:4398951439895144004441494Delftia sp. Cs1-4 chromosome, complete genomeNCS1 nucleoside transporter family9e-59228
NC_010125:1051735:1060846106084610623211476Gluconacetobacter diazotrophicus PAl 5, complete genomeputative allantoin permease5e-52205
NC_016593:1527456:1533682153368215351901509Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completeNCS1 nucleoside transporter3e-50199
NC_006510:1446490:1452639145263914541471509Geobacillus kaustophilus HTA426, complete genomehypothetical protein9e-50198
NC_014915:1376035:1382253138225313837611509Geobacillus sp. Y412MC52 chromosome, complete genomepermease for cytosine/purines uracil thiamine allantoin1e-49198
NC_013411:2236166:2242309224230922438171509Geobacillus sp. Y412MC61, complete genomepermease for cytosine/purines uracil thiamine allantoin1e-49198
NC_003910:4234000:4267261426726142688081548Colwellia psychrerythraea 34H, complete genometransporter, NCS1 nucleoside family3e-48193
NC_008752:1025980:1062067106206710635361470Acidovorax avenae subsp. citrulli AAC00-1, complete genomepermease for cytosine/purines, uracil, thiamine, allantoin7e-43175
NC_018604:2253539:2275148227514822765721425Brachyspira pilosicoli WesB complete genomeNCS1 nucleoside transporter8e-40165
NC_016023:579000:5793505793505807861437Bacillus coagulans 36D1 chromosome, complete genomecytosine/purines uracil thiamine allantoin permease8e-24112
NC_016584:5625975:5625975562597556273631389Desulfosporosinus orientis DSM 765 chromosome, complete genomecytosine/purines uracil thiamine allantoin permease3e-23110
NC_014160:869873:8885348885348899431410Thermosphaera aggregans DSM 11486 chromosome, complete genomepermease for cytosine/purines uracil thiamine allantoin2e-22107
NC_008525:270310:2831742831742845381365Pediococcus pentosaceus ATCC 25745, complete genomePurine-cytosine permease related protein3e-1377
NC_016605:50695:6430564305656781374Pediococcus claussenii ATCC BAA-344 chromosome, complete genomepermease for cytosine/purines, uracil, thiamine, allantoin family protein9e-1168.9
NC_015957:5310000:5310137531013753117081572Streptomyces violaceusniger Tu 4113 chromosome, complete genomecytosine/purines uracil thiamine allantoin permease2e-0757.8
NC_017955:3057592:3057592305759230591061515Modestobacter marinus, complete genomecytosine/purines uracil thiamine allantoin permease1e-0655.1
NC_015859:3346473:3355432335543233569041473Corynebacterium variabile DSM 44702 chromosome, complete genomehypothetical protein1e-0655.1
NC_015942:668775:6765486765486779211374Acidithiobacillus ferrivorans SS3 chromosome, complete genomecytosine/purines uracil thiamine allantoin permease2e-0654.3
NC_013741:1196997:1201836120183612030921257Archaeoglobus profundus DSM 5631, complete genomepermease for cytosine/purines uracil thiamine allantoin3e-0653.5