Pre_GI: BLASTN Hits

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Query: NC_004129:2034500 Pseudomonas fluorescens Pf-5, complete genome

Start: 2034500, End: 2064599, Length: 30100

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_012660:5121219*5121219514562724409Pseudomonas fluorescens SBW25 chromosome, complete genome01713BLASTN svgBLASTP svg
NC_020209:32620003262000328797525976Pseudomonas poae RE*1-1-14, complete genome0801BLASTN svgBLASTP svg
NC_007005:2149275*2149275217042621152Pseudomonas syringae pv. syringae B728a, complete genome2e-84321BLASTN svgBLASTP svg
NC_004578:4499143*4499143452348624344Pseudomonas syringae pv. tomato str. DC3000, complete genome9e-84319BLASTN svgBLASTP svg
NC_008027:55333115533311555523921929Pseudomonas entomophila L48, complete genome6e-82313BLASTN svgBLASTP svg
NC_005773:17688517688520456427680Pseudomonas syringae pv. phaseolicola 1448A, complete genome3e-68268BLASTN svgBLASTP svg
NC_007005:58259255825925584413718213Pseudomonas syringae pv. syringae B728a, complete genome7e-66260BLASTN svgBLASTP svg
NC_009439:2337024*2337024236235425331Pseudomonas mendocina ymp, complete genome9e-47196BLASTN svgBLASTP svg
NC_015410:2838132*2838132286405125920Pseudomonas mendocina NK-01 chromosome, complete genome6e-45190BLASTN svgBLASTP svg
NC_004603:1115134*1115134114139026257Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete3e-22115BLASTN svgBLASTP svg
NC_013456:2528284*2528284254628518002Vibrio sp. Ex25 chromosome 1, complete genome3e-22115BLASTN svgBLASTP svg
NC_002505:1892430*1892430192509932670Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete4e-21111BLASTN svgBLASTP svg
NC_013592:1730505*1730505176316532661Dickeya dadantii Ech586, complete genome2e-20109BLASTN svgBLASTP svg
NC_012912:1788308*1788308184662758320Dickeya zeae Ech1591, complete genome2e-20109BLASTN svgBLASTP svg
NC_015703:3842144*3842144386963427491Runella slithyformis DSM 19594 chromosome, complete genome1e-18103BLASTN svgBLASTP svg
NC_014500:3023762*3023762306170037939Dickeya dadantii 3937 chromosome, complete genome4e-18101BLASTN svgBLASTP svg
NC_009778:2227627*2227627228586658240Enterobacter sakazakii ATCC BAA-894, complete genome4e-18101BLASTN svgBLASTP svg
NC_008570:1986466*1986466201051824053Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_009348:2631759*2631759265138819630Aeromonas salmonicida subsp. salmonicida A449, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_012691:2097287*2097287211808120795Tolumonas auensis DSM 9187, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_021150:32009593200959322539424436Azotobacter vinelandii CA6, complete genome3e-1695.6BLASTN svgBLASTP svg
NC_014168:2575799*2575799261011334315Segniliparus rotundus DSM 44985 chromosome, complete genome3e-1695.6BLASTN svgBLASTP svg
NC_012560:32009613200961322539624436Azotobacter vinelandii DJ, complete genome3e-1695.6BLASTN svgBLASTP svg
NC_010465:2383219*2383219240542422206Yersinia pseudotuberculosis YPIII, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_004088:2491303*2491303251808626784Yersinia pestis KIM, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_004547:1970686*1970686199651325828Erwinia carotovora subsp. atroseptica SCRI1043, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_010067:1782998*1782998180098317986Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete2e-1385.7BLASTN svgBLASTP svg
NC_012917:2921932*2921932295050128570Pectobacterium carotovorum subsp. carotovorum PC1, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_013421:3117639*3117639314038322745Pectobacterium wasabiae WPP163, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_014121:2629075*2629075265233623262Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete2e-1385.7BLASTN svgBLASTP svg
NC_015663:3466471*3466471350514038670Enterobacter aerogenes KCTC 2190 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_006511:1770000*1770000179181621817Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC1e-1283.8BLASTN svgBLASTP svg
NC_004631:1842050*1842050186312621077Salmonella enterica subsp. enterica serovar Typhi Ty2, complete1e-1283.8BLASTN svgBLASTP svg
NC_004337:1065609*1065609109071125103Shigella flexneri 2a str. 301, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_003198:1117687*1117687114274925063Salmonella enterica subsp. enterica serovar Typhi str. CT18,1e-1283.8BLASTN svgBLASTP svg
NC_003197:12075971207597123259925003Salmonella typhimurium LT2, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_000913:1087062*1087062110699919938Escherichia coli K12, complete genome1e-1283.8BLASTN svgBLASTP svg
AC_000091:1083798*1083798110686123064Escherichia coli W3110 DNA, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_006905:1186895*1186895121502828134Salmonella enterica subsp. enterica serovar Choleraesuis str1e-1283.8BLASTN svgBLASTP svg
NC_007946:1119000*1119000114261923620Escherichia coli UTI89, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_008258:1076922*1076922110024923328Shigella flexneri 5 str. 8401, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_015968:1709680*1709680173221922540Enterobacter asburiae LF7a chromosome, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_013716:1178383*1178383120516726785Citrobacter rodentium ICC168, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_011149:1987291*1987291203423646946Salmonella enterica subsp. enterica serovar Agona str. SL483,1e-1283.8BLASTN svgBLASTP svg
NC_011083:12165001216500123593619437Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,1e-1283.8BLASTN svgBLASTP svg
NC_011080:12099351209935123471124777Salmonella enterica subsp. enterica serovar Newport str. SL254,1e-1283.8BLASTN svgBLASTP svg
NC_010468:2809125*2809125282748818364Escherichia coli ATCC 8739, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_010102:1979742*1979742200183422093Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,1e-1283.8BLASTN svgBLASTP svg
NC_015379:67145456714545674216027616Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,4e-1281.8BLASTN svgBLASTP svg
NC_008321:1993541*1993541201934825808Shewanella sp. MR-4, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_008322:2077628*2077628211677239145Shewanella sp. MR-7, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_008577:2115440*2115440215134235903Shewanella sp. ANA-3 chromosome 1, complete sequence2e-1179.8BLASTN svgBLASTP svg
NC_010545:11950*119506085348904Corynebacterium urealyticum DSM 7109, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_011901:3072817*3072817309809925283Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, complete2e-1179.8BLASTN svgBLASTP svg
NC_015379:1600715*1600715162682426110Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,6e-1177.8BLASTN svgBLASTP svg
NC_005296:5238882*5238882526489126010Rhodopseudomonas palustris CGA009, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_010172:798923*79892388030381381Methylobacterium extorquens PA1, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_010505:1205747*1205747122904923303Methylobacterium radiotolerans JCM 2831, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_010725:750911*75091177963428724Methylobacterium populi BJ001, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_011004:5520771*5520771554678126011Rhodopseudomonas palustris TIE-1, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_013416:1429881*1429881145213822258Aggregatibacter actinomycetemcomitans D11S-1, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_014217:4597426*4597426462121223787Starkeya novella DSM 506 chromosome, complete genome9e-1073.8BLASTN svgBLASTP svg
AC_000091:24624612462461248878526325Escherichia coli W3110 DNA, complete genome4e-0971.9BLASTN svgBLASTP svg
CP002185:2608000*2608000263106823069Escherichia coli W, complete genome4e-0971.9BLASTN svgBLASTP svg
CP002516:1475521*1475521149709321573Escherichia coli KO11, complete genome4e-0971.9BLASTN svgBLASTP svg
CU928145:2655989*2655989268823232244Escherichia coli 55989 chromosome, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_000913:2455037*2455037248136126325Escherichia coli K12, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_011748:2655989*2655989268823232244Escherichia coli 55989, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_005085:1269787*1269787132843458648Chromobacterium violaceum ATCC 12472, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_013722:1689125*1689125175227863154Xanthomonas albilineans, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_014215:14250014250016776025261Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1,6e-0867.9BLASTN svgBLASTP svg
NC_014391:67491566749156676941520260Micromonospora aurantiaca ATCC 27029 chromosome, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_001318:479709*47970950779828090Borrelia burgdorferi B31, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_004129:24407442440744246509824355Pseudomonas fluorescens Pf-5, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_005955:173436*17343619910325668Bartonella quintana str. Toulouse, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009667:1371924*1371924140112629203Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequence2e-0765.9BLASTN svgBLASTP svg
NC_013501:1691532*1691532171518723656Rhodothermus marinus DSM 4252, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_018681:867230*86723090173034501Nocardia brasiliensis ATCC 700358 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_004129:4093610*4093610411954425935Pseudomonas fluorescens Pf-5, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_007508:1221500*1221500126063139132Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_008146:86131986131994414682828Mycobacterium sp. MCS, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_008148:79261079261081163719028Rubrobacter xylanophilus DSM 9941, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_008705:86862386862395099082368Mycobacterium sp. KMS, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_016010:1169850*1169850119450124652Xanthomonas axonopodis pv. citrumelo F1 chromosome, complete9e-0763.9BLASTN svgBLASTP svg
NC_021177:21398382139838216484225005Streptomyces fulvissimus DSM 40593, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_014550:2835696*2835696285851122816Arthrobacter arilaitensis Re117, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_014366:1435785*1435785146660130817Gamma proteobacterium HdN1, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_010524:67421667421670822934014Leptothrix cholodnii SP-6, complete genome4e-0661.9BLASTN svgBLASTP svg