Pre_GI Gene

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Host: NC_004129 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004129:2440744 Pseudomonas fluorescens Pf-5, complete genome

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
244074424420271284arsenite efflux transporterQuickGO ontologyBLASTP
24420482442395348arsenic resistance transcriptional regulatorQuickGO ontologyBLASTP
24425122443171660hypothetical proteinBLASTP
24434162443847432Uncharacterized ACRQuickGO ontologyBLASTP
24438762444496621acyl carrier protein phosphodiesterase putativeQuickGO ontologyBLASTP
24444932444939447PhnO-related proteinQuickGO ontologyBLASTP
244502724464301404transcriptional regulator GntR familyQuickGO ontologyBLASTP
24471932447474282hypothetical protein
244817524526684494hypothetical proteinBLASTP
24529902453790801amino acid ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
245380724550481242D-amino acid dehydrogenase small subunit family proteinQuickGO ontologyBLASTP
24550952455805711amino acid ABC transporter permease proteinQuickGO ontologyBLASTP
24558022456521720amino acid ABC transporter permease proteinQuickGO ontologyBLASTP
24566082457360753amino acid ABC transporter periplasmic amino acid-binding proteinQuickGO ontologyBLASTP
24573772458264888SIS domain proteinQuickGO ontologyBLASTP
245838424594301047malateL-lactate dehydrogenase family proteinQuickGO ontologyBLASTP
245963924608231185hypothetical proteinBLASTP
246135424625171164hypothetical proteinBLASTP
246244724650982652sensory box histidine kinaseresponse regulatorQuickGO ontologyBLASTP