Pre_GI: BLASTP Hits

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Query: NC_017319:192482:215474 Shigella flexneri 2002017 plasmid pSFxv_1, complete sequence

Start: 215474, End: 215665, Length: 192

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012779:3652737:365932436593243659719396Edwardsiella ictaluri 93-146, complete genomeiso-IS1 ORF23e-1167
NC_007606:1515403:151886115188611519217357Shigella dysenteriae Sd197, complete genomeiso-IS1 ORF24e-1063.5
NC_007607:87000:104960104960105355396Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceiso-IS1 ORF27e-1062.8
NC_007606:4182188:419051941905194190914396Shigella dysenteriae Sd197, complete genomeiso-IS1 ORF26e-1062.8
NC_009790:42112:434884348843883396Escherichia coli E24377A plasmid pETEC_74, complete sequenceIS1, transposase orfB6e-1062.8
NC_007606:1999870:200490320049032005298396Shigella dysenteriae Sd197, complete genomeiso-IS1 ORF26e-1062.8
NC_007606:2353098:236319223631922363587396Shigella dysenteriae Sd197, complete genomeiso-IS1 ORF26e-1062.8
NC_007606:2353098:236123623612362361631396Shigella dysenteriae Sd197, complete genomeiso-IS1 ORF26e-1062.8
NC_007606:1515403:152490515249051525300396Shigella dysenteriae Sd197, complete genomeiso-IS1 ORF26e-1062.8
NC_007606:4182188:418832341883234188718396Shigella dysenteriae Sd197, complete genomeiso-IS1 ORF26e-1062.8
NC_007606:1515403:152851515285151528910396Shigella dysenteriae Sd197, complete genomeiso-IS1 ORF26e-1062.8
NC_008258:2542863:255488925548892555284396Shigella flexneri 5 str. 8401, complete genomeiso-IS1 ORF21e-0962
NC_004337:2548288:256041225604122560807396Shigella flexneri 2a str. 301, complete genomeiso-IS1 ORF21e-0962
NC_004741:2526421:253854525385452538940396Shigella flexneri 2a str. 2457T, complete genomeIS1N orfB1e-0962
NC_017328:2586171:259805025980502598745696Shigella flexneri 2002017 chromosome, complete genomeIso-IS1 ORF21e-0962
NC_013421:701005:708579708579709016438Pectobacterium wasabiae WPP163, complete genome2e-0961.2
NC_013421:478586:484997484997485434438Pectobacterium wasabiae WPP163, complete genome2e-0961.2
NC_009788:16360:241412414124494354Escherichia coli E24377A plasmid pETEC_73, complete sequence2e-0960.8
NC_007946:289425:312593312593312769177Escherichia coli UTI89, complete genomeInsB protein1e-0858.5
NC_008253:334467:369290369290369466177Escherichia coli 536, complete genomeInsB protein1e-0858.5
NC_011742:291237:301957301957302133177Escherichia coli S88 chromosome, complete genometransposase InsB (ORF1) IS1 (Fragment)1e-0858.5
NC_017265:644384:652098652098652400303Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,Insertion element iso-IS1n protein insB4e-0857
NC_017168:751078:760962760962761264303Yersinia pestis A1122 chromosome, complete genometransposase4e-0857
NC_009381:4169353:417923741792374179539303Yersinia pestis Pestoides F chromosome, complete genometransposase4e-0857
NC_006155:456000:466125466125466427303Yersinia pseudotuberculosis IP 32953, complete genome4e-0857
NC_008149:3790897:380078138007813801083303Yersinia pestis Nepal516, complete genometransposase4e-0857
NC_010465:4222586:422972042297204229995276Yersinia pseudotuberculosis YPIII, complete genomeIS1 transposase4e-0856.6
NC_004431:364000:377117377117377293177Escherichia coli CFT073, complete genomeInsB protein5e-0856.6
NC_004431:1119700:113140711314071131799393Escherichia coli CFT073, complete genomeUnknown in IS1N6e-0856.2
NC_007606:1209132:122579512257951226142348Shigella dysenteriae Sd197, complete genomeiso-IS1 ORF22e-0754.3
NC_013361:1284579:129487312948731295310438Escherichia coli O26:H11 str. 11368 chromosome, complete genomeIS1nuxi transposase3e-0753.9
NC_013008:1307392:131689113168911317328438Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein3e-0753.9
NC_011353:1307106:131660513166051317042438Escherichia coli O157:H7 str. EC4115 chromosome, complete genome3e-0753.9
NC_002655:1053082:106249710624971062934438Escherichia coli O157:H7 EDL933, complete genomeunknown in IS1N3e-0753.9
NC_002695:1364833:137433213743321374769438Escherichia coli O157:H7 str. Sakai, complete genometransposase3e-0753.9
NC_002655:1448605:145810414581041458541438Escherichia coli O157:H7 EDL933, complete genomeunknown in IS1N3e-0753.9
NC_013364:1257801:126809312680931268530438Escherichia coli O111:H- str. 11128, complete genomeputative IS1nuxi1 transposase3e-0753.9
NC_007946:1073135:108484010848401085304465Escherichia coli UTI89, complete genomeputative transposase2e-0651.2