Pre_GI: BLASTP Hits

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Query: NC_016830:1182765:1212622 Pseudomonas fluorescens F113 chromosome, complete genome

Start: 1212622, End: 1213074, Length: 453

Host Lineage: Pseudomonas fluorescens; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This organism is a nonpathogenic saprophyte which inhabits soil, water and plant surface environments. If iron is in low supply, it produces a soluble, greenish fluorescent pigment, which is how it was named. As these environmentally versatile bacteria possess the ability to degrade (at least partially) multiple different pollutants, they are studied in their use as bioremediants. Furthermore a number of strains also posses the ability to suppress agricultural pathogens like fungal infections, hence their role as biocontrol (biological disease control) agents is under examination. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008260:2142311:214851621485162148980465Alcanivorax borkumensis SK2, complete genomerrf2 family protein4e-52203
NC_007484:1823751:184336618433661843866501Nitrosococcus oceani ATCC 19707, complete genomeIron-sulphur cluster assembly transcription factor IscR1e-41167
NC_012559:2752825:277138227713822771861480Laribacter hongkongensis HLHK9, complete genomePredicted transcriptional regulator3e-35147
NC_015731:2148517:217108821710882171549462Nitrosomonas sp. Is79A3 chromosome, complete genomeBadM/Rrf2 family transcriptional regulator3e-33140
NC_015856:3675592:367686336768633677357495Collimonas fungivorans Ter331 chromosome, complete genomeIron-sulfur cluster regulator IscR2e-32137
NC_008576:3812500:383085538308553831328474Magnetococcus sp. MC-1, complete genometranscriptional regulator, BadM/Rrf2 family3e-31133
NC_002946:618439:625195625195625641447Neisseria gonorrhoeae FA 1090, complete genomehypothetical protein1e-30131
NC_011035:1033942:104694410469441047390447Neisseria gonorrhoeae NCCP11945 chromosome, complete genomePutative HTH-type transcriptional regulator NMB13781e-30131
NC_017511:950411:962769962769963215447Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genomehypothetical protein1e-30131
NC_017517:1377617:139072013907201391166447Neisseria meningitidis M01-240355 chromosome, complete genomeiron-sulfur cluster assembly transcription factor IscR3e-26117
NC_017516:917817:924802924802925248447Neisseria meningitidis H44/76 chromosome, complete genomeiron-sulfur cluster assembly transcription factor IscR3e-26117
NC_017512:1264542:127686512768651277311447Neisseria meningitidis WUE 2594, complete genomeiron-sulfur cluster-assembly HTH-type transcriptional repressor IscR3e-26117
NC_017505:1338661:135301813530181353464447Neisseria meningitidis alpha710 chromosome, complete genomeDNA-binding protein3e-26117
NC_013016:1257942:127286812728681273314447Neisseria meningitidis alpha14 chromosome, complete genomeputative transcription factor3e-26117
NC_003116:1488576:150089915008991501345447Neisseria meningitidis Z2491, complete genomehypothetical protein3e-26117
NC_003030:1811820:182470418247041825123420Clostridium acetobutylicum ATCC 824, complete genomePredicted transcriptional regulator (HTH winged helix type)1e-21102
NC_015687:1811573:182630418263041826723420Clostridium acetobutylicum DSM 1731 chromosome, complete genometranscriptional regulator1e-21102
NC_017295:1809386:182411718241171824536420Clostridium acetobutylicum EA 2018 chromosome, complete genometranscriptional regulator (HTH winged helix type)1e-21102
NC_009952:1680682:169719516971951697683489Dinoroseobacter shibae DFL 12, complete genomeHTH-type transcriptional regulator8e-22102
NC_011899:948790:955560955560956015456Halothermothrix orenii H 168, complete genometranscriptional regulator, BadM/Rrf2 family8e-2199.4
NC_014328:1307490:130946913094691309915447Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative transcriptional regulator4e-2096.7
NC_021182:2422226:243676224367622437202441Clostridium pasteurianum BC1, complete genomerrf2 family protein, putative transcriptional regulator9e-2095.9
NC_008262:1950205:195474719547471955208462Clostridium perfringens SM101, complete genomeuncharacterized conserved protein of YjeB/RRF2 family1e-1995.5
NC_007109:894000:895210895210895629420Rickettsia felis URRWXCal2, complete genomeIron-sulfur cluster assembly transcription factor IscR2e-1994.4
NC_013960:2166367:217137921713792171789411Nitrosococcus halophilus Nc4 chromosome, complete genometranscriptional regulator, Rrf2 family2e-1994.4
NC_011830:3786173:380502638050263805466441Desulfitobacterium hafniense DCB-2, complete genometranscriptional regulator, BadM/Rrf2 family5e-1993.2
NC_009437:2367842:238853223885322388984453Caldicellulosiruptor saccharolyticus DSM 8903, complete genomeBadM/Rrf2 family transcriptional regulator7e-1992.8
NC_012034:1783912:180473918047391805191453Anaerocellum thermophilum DSM 6725, complete genometranscriptional regulator, BadM/Rrf2 family7e-1992.8
NC_015949:1180755:120145512014551201907453Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeBadM/Rrf2 family transcriptional regulator1e-1891.7
NC_014721:1777644:179835917983591798811453Caldicellulosiruptor kristjanssonii 177R1B chromosome, completetranscriptional regulator, badm/rrf2 family1e-1891.7
NC_009699:2733529:275432327543232754769447Clostridium botulinum F str. Langeland chromosome, complete genomerrF2 family protein1e-1891.7
NC_009495:2685646:270636227063622706808447Clostridium botulinum A str. ATCC 3502 chromosome, complete genometranscriptional regulator1e-1891.7
NC_014652:1032711:105395410539541054406453Caldicellulosiruptor hydrothermalis 108 chromosome, completetranscriptional regulator, badm/rrf2 family3e-1890.5
NC_008593:1461771:147682414768241477258435Clostridium novyi NT, complete genomeiron-sulfur cluster assembly transcription factor IscR3e-1890.5
NC_014657:1518721:153989615398961540348453Caldicellulosiruptor owensensis OL chromosome, complete genometranscriptional regulator, badm/rrf2 family3e-1890.5
NC_019978:1816940:183458218345821835040459Halobacteroides halobius DSM 5150, complete genomerrf2 family protein, putative transcriptional regulator5e-1889.7
NC_014392:969498:989139989139989591453Caldicellulosiruptor obsidiansis OB47 chromosome, complete genometranscriptional regulator, BadM/Rrf2 family9e-1889
NC_016012:805680:810599810599811045447Candidatus Arthromitus sp. SFB-rat-Yit, complete genomeRRF2 family protein2e-1787.8
NC_018515:989616:995290995290995742453Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeRrf2 family transcriptional regulator5e-1786.7
NC_003366:2057656:206543720654372065823387Clostridium perfringens str. 13, complete genomehypothetical protein2e-1684.3
NC_015437:918614:933404933404933835432Selenomonas sputigena ATCC 35185 chromosome, complete genometranscriptional regulator, BadM/Rrf2 family7e-1682.8
NC_009925:3344894:334825333482533348696444Acaryochloris marina MBIC11017, complete genometranscriptional Regulator, BadM/Rrf2 family2e-1581.3
NC_010718:304440:319008319008319475468Natranaerobius thermophilus JW/NM-WN-LF, complete genometranscriptional regulator, BadM/Rrf2 family5e-1580.1
NC_013740:2141523:215595221559522156374423Acidaminococcus fermentans DSM 20731, complete genometranscriptional regulator, BadM/Rrf2 family9e-1579
NC_016627:3158353:317550531755053175954450Clostridium clariflavum DSM 19732 chromosome, complete genomerrf2 family protein, putative transcriptional regulator3e-1477.4
NC_014221:1932903:193711319371131937562450Truepera radiovictrix DSM 17093 chromosome, complete genometranscriptional regulator, BadM/Rrf2 family3e-1477.4
NC_009012:2953638:299313429931342993577444Clostridium thermocellum ATCC 27405, complete genometranscriptional regulator, BadM/Rrf2 family5e-1476.6
NC_016627:2524307:253095125309512531400450Clostridium clariflavum DSM 19732 chromosome, complete genomerrf2 family protein, putative transcriptional regulator8e-1475.9
NC_016627:2524307:253149425314942531952459Clostridium clariflavum DSM 19732 chromosome, complete genomerrf2 family protein, putative transcriptional regulator3e-1374.3
NC_014377:1089894:110347411034741103926453Thermosediminibacter oceani DSM 16646 chromosome, complete genometranscriptional regulator, BadM/Rrf2 family3e-1374.3
NC_011297:1357947:137869413786941379128435Dictyoglomus thermophilum H-6-12, complete genomeRRF2 protein family5e-1373.2
NC_015389:1298689:132255113225511323003453Coriobacterium glomerans PW2 chromosome, complete genometranscriptional regulator, BadM/Rrf2 family3e-1270.9
NC_014844:2158318:215831821583182158755438Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeRrf2 family transcriptional regulator3e-1167.4
NC_010001:1:114341143411871438Clostridium phytofermentans ISDg, complete genometranscriptional regulator, BadM/Rrf2 family4e-1167
NC_013385:1882549:190942419094241909837414Ammonifex degensii KC4, complete genometranscriptional regulator, BadM/Rrf2 family1e-1065.1
NC_017187:2037988:204214020421402042553414Arcobacter butzleri ED-1, complete genomeBadM/Rrf2 family transcriptional regulator9e-1062.4
NC_016612:3803130:381278938127893813133345Klebsiella oxytoca KCTC 1686 chromosome, complete genomeputative transcriptional regulator1e-0962
NC_009483:2489000:252245825224582522871414Geobacter uraniireducens Rf4 chromosome, complete genomeBadM/Rrf2 family transcriptional regulator2e-0961.6
NC_011725:4373721:437490243749024375318417Bacillus cereus B4264 chromosome, complete genomerrf2 family protein2e-0858.2
NC_008726:4725389:474162347416234742099477Mycobacterium vanbaalenii PYR-1, complete genometranscriptional regulator, BadM/Rrf2 family2e-0858.2
NC_007604:1512709:151899415189941519449456Synechococcus elongatus PCC 7942, complete genomehypothetical protein2e-0857.8
NC_006576:2610565:261621826162182616673456Synechococcus elongatus PCC 6301, complete genomehypothetical protein2e-0857.8
NC_008599:903530:924746924746925123378Campylobacter fetus subsp. fetus 82-40, complete genometranscriptional regulator, BadM/Rrf2 family2e-0857.8
NC_008536:4921224:493025849302584930734477Solibacter usitatus Ellin6076, complete genometranscriptional regulator, BadM/Rrf2 family7e-0856.2
NC_007797:692944:6940786940786955381461Anaplasma phagocytophilum HZ, complete genomerrf2 family protein /cysteine desulfurase2e-0754.7
NC_011979:2892119:289631228963122896725414Geobacter sp. FRC-32, complete genometranscriptional regulator, BadM/Rrf2 family2e-0754.3
NC_014551:483773:490676490676491179504Bacillus amyloliquefaciens DSM 7, complete genometranscriptional regulator6e-0753.1
NC_017188:461177:478328478328478831504Bacillus amyloliquefaciens TA208 chromosome, complete genometranscriptional regulator1e-0652.4
NC_020272:20435:261892618926692504Bacillus amyloliquefaciens IT-45, complete genomeHTH-type transcriptional regulator iscR1e-0652
NC_008825:3161146:316408931640893164643555Methylibium petroleiphilum PM1, complete genomeputative transcriptional regulator PA26921e-0652
NC_010520:3674883:369132836913283691729402Clostridium botulinum A3 str. Loch Maree, complete genomeputative transcriptional regulator2e-0651.6
NC_005125:839000:849831849831850253423Gloeobacter violaceus PCC 7421, complete genomehypothetical protein3e-0650.8
NC_012658:3678000:368338836833883683789402Clostridium botulinum Ba4 str. 657 chromosome, complete genomeRRF2 family protein4e-0650.4
NC_009848:720510:742990742990743427438Bacillus pumilus SAFR-032, complete genometranscriptional regulator7e-0649.7