Pre_GI: BLASTP Hits

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Query: NC_014624:3316916:3326348 Eubacterium limosum KIST612 chromosome, complete genome

Start: 3326348, End: 3326935, Length: 588

Host Lineage: Eubacterium limosum; Eubacterium; Eubacteriaceae; Clostridiales; Firmicutes; Bacteria

General Information: Eubacterium limosum KIST612 is an acetogenic bacterium isolated from an anaerobic digester and has a high growth rate on synthesis gas (CO; carbon monoxide) using it as a sole energy source. This organism produces acetate as well as butyrate and ethanol as fermentation products from syngas. Therefore, E. limosum KIST612 has been considered for a model strain for bioenergy production from syngas (obtained from biomass).




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012778:207415:217309217309218022714Eubacterium eligens ATCC 27750, complete genometwo-component system, LytT family, response regulator6e-2097.1
NC_015977:3424178:347917734791773479884708Roseburia hominis A2-183 chromosome, complete genomeresponse regulator of the lytr/algr family protein6e-1994
NC_018704:2417902:242905824290582429768711Amphibacillus xylanus NBRC 15112, complete genomeputative two-component system response regulator7e-1787
NC_009089:1283000:128229312822931283006714Clostridium difficile 630, complete genometwo-component response regulator2e-1685.5
NC_013174:501326:500595500595501329735Jonesia denitrificans DSM 20603, complete genometwo component transcriptional regulator, LytTR family2e-1685.1
NC_009922:42696:456394563946355717Alkaliphilus oremlandii OhILAs, complete genometwo component transcriptional regulator, LytTR family3e-1685.1
NC_015172:850802:866232866232866960729Syntrophobotulus glycolicus DSM 8271 chromosome, complete genometwo component transcriptional regulator, LytTR family4e-1684.7
NC_014363:1973670:198281319828131983520708Olsenella uli DSM 7084 chromosome, complete genometwo component transcriptional regulator, LytTR family6e-1684
NC_007333:3360000:336380033638003364594795Thermobifida fusca YX, complete genomeresponse regulator receiver6e-1684
NC_016609:2951301:298003529800352980781747Niastella koreensis GR20-10 chromosome, complete genomeLytTR family two component transcriptional regulator6e-1684
NC_016048:308342:328892328892329599708Oscillibacter valericigenes Sjm18-20, complete genomeputative two-component response regulator8e-1683.6
NC_014152:2849991:286797228679722868697726Thermincola sp. JR, complete genometwo component transcriptional regulator, LytTR family9e-1683.2
NC_015510:6653159:666073866607386661478741Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeLytTR family two component transcriptional regulator1e-1583.2
NC_010520:1146000:116684911668491167565717Clostridium botulinum A3 str. Loch Maree, complete genomeLytTr DNA-binding domain family5e-1580.9
NC_013316:2033906:207459320745932075183591Clostridium difficile R20291, complete genomehypothetical protein2e-1479
NC_007644:1638083:165823516582351658972738Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, LytR/AlgR family3e-1478.2
NC_007575:973559:975967975967976665699Sulfurimonas denitrificans DSM 1251, complete genomeLytR/AlgR family transcriptional regulator3e-1478.2
NC_016609:4331359:434517843451784345930753Niastella koreensis GR20-10 chromosome, complete genomeLytTR family two component transcriptional regulator6e-1477.4
NC_011830:3904034:392032539203253921080756Desulfitobacterium hafniense DCB-2, complete genometwo component transcriptional regulator, LytTR family1e-1376.3
NC_008261:576923:593925593925594641717Clostridium perfringens ATCC 13124, complete genomeDNA-binding response regulator2e-1375.5
NC_015726:3452232:345363334536333454394762Cupriavidus necator N-1 chromosome 1, complete sequenceLytR family transcriptional regulator2e-1375.1
NC_010658:2529033:255507825550782555812735Shigella boydii CDC 3083-94, complete genomeresponse regulator4e-1374.7
NC_008258:2473000:249696424969642497698735Shigella flexneri 5 str. 8401, complete genomeputative 2-component transcriptional regulator4e-1374.7
NC_004337:2478461:250322425032242503958735Shigella flexneri 2a str. 301, complete genomeputative 2-component transcriptional regulator4e-1374.7
CP002516:1419413:142028314202831421017735Escherichia coli KO11, complete genometwo component transcriptional regulator, LytTR family4e-1374.7
NC_013941:2928000:296958729695872970321735Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein4e-1374.7
NC_016822:2678691:270562327056232706357735Shigella sonnei 53G, complete genomeLytTR family two component transcriptional regulator4e-1374.7
NC_016902:1419413:142028314202831421017735Escherichia coli KO11FL chromosome, complete genomeLytTR family two component transcriptional regulator4e-1374.7
NC_008536:1778500:179196917919691792745777Solibacter usitatus Ellin6076, complete genomeresponse regulator receiver protein4e-1374.7
NC_006347:3843228:384459438445943845331738Bacteroides fragilis YCH46, complete genometwo-component system response regulator7e-1373.9
NC_016776:3798108:379737437973743798111738Bacteroides fragilis 638R, complete genomeputative two-component system, response regulator7e-1373.9
NC_003228:3752035:375130137513013752038738Bacteroides fragilis NCTC 9343, complete genomeputative two-component system, response regulator6e-1373.9
NC_009616:99647:116610116610117290681Thermosipho melanesiensis BI429 chromosome, complete genomeLytTR family two component transcriptional regulator5e-1373.9
NC_012778:841934:882083882083882793711Eubacterium eligens ATCC 27750, complete genomehypothetical protein1e-1273.2
NC_007907:2879568:289297128929712893726756Desulfitobacterium hafniense Y51, complete genomehypothetical protein1e-1272.8
NC_016627:1485799:149181114918111492536726Clostridium clariflavum DSM 19732 chromosome, complete genomeresponse regulator of the LytR/AlgR family2e-1272
NC_014633:837588:857228857228857983756Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequenceLytTR family two component transcriptional regulator3e-1272
NC_014387:281157:282005282005282703699Butyrivibrio proteoclasticus B316 chromosome 1, complete genomeLytTR/response regulator domain-containing protein3e-1271.6
NC_014624:287500:304428304428305174747Eubacterium limosum KIST612 chromosome, complete genomeResponse regulator of the LytR/AlgR family4e-1270.9
NC_016048:375676:399488399488400183696Oscillibacter valericigenes Sjm18-20, complete genomeputative two-component response regulator6e-1270.9
NC_016751:1700164:172001917200191720765747Marinitoga piezophila KA3 chromosome, complete genomeresponse regulator of the LytR/AlgR family6e-1270.5
NC_009617:648000:666775666775667533759Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeLytTR family two component transcriptional regulator8e-1270.1
NC_006510:1501487:152070415207041521444741Geobacillus kaustophilus HTA426, complete genometranscriptional regulator9e-1270.1
NC_009828:600349:601856601856602527672Thermotoga lettingae TMO, complete genometwo component transcriptional regulator, LytTR family1e-1169.7
NC_014376:2921769:293831329383132939053741Clostridium saccharolyticum WM1 chromosome, complete genometwo component transcriptional regulator, LytTR family2e-1169.3
NC_014633:583858:604072604072604797726Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequenceLytTR family two component transcriptional regulator2e-1169.3
NC_013037:5442131:545847354584735459195723Dyadobacter fermentans DSM 18053, complete genometwo component transcriptional regulator, LytTR family2e-1168.9
NC_009495:3502000:352046735204673521231765Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeDNA-binding response regulator, LytTr family2e-1168.6
NC_009697:3463736:349645534964553497219765Clostridium botulinum A str. ATCC 19397 chromosome, completeLytTr family DNA-binding response regulator2e-1168.6
NC_012563:3729817:376253737625373763301765Clostridium botulinum A2 str. Kyoto, complete genomeDNA-binding response regulator, LytTr family3e-1168.2
NC_011898:3159411:319241031924103193168759Clostridium cellulolyticum H10, complete genometwo component transcriptional regulator, LytTR family3e-1168.2
NC_017297:3594000:361271236127123613476765Clostridium botulinum F str. 230613 chromosome, complete genomeDNA-binding response regulator, LytTr family3e-1168.2
NC_009699:3581376:361409836140983614862765Clostridium botulinum F str. Langeland chromosome, complete genomeLytTr family DNA-binding response regulator3e-1168.2
NC_017316:2581781:259771425977142598442729Enterococcus faecalis OG1RF chromosome, complete genomeresponse regulator4e-1167.8
NC_010520:3580000:359767035976703598434765Clostridium botulinum A3 str. Loch Maree, complete genomeDNA-binding response regulator, LytTr family6e-1167.4
NC_014934:11341:366453664537337693Cellulophaga algicola DSM 14237 chromosome, complete genometwo component transcriptional regulator, lyttr family8e-1167
NC_015510:1234500:125002412500241250725702Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeLytTR family two component transcriptional regulator1e-1066.6
NC_004668:3053119:306801830680183068746729Enterococcus faecalis V583, complete genomeresponse regulator1e-1066.6
NC_016894:77853:840308403084764735Acetobacterium woodii DSM 1030 chromosome, complete genometwo component transcriptional regulator9e-1166.6
NC_014828:943911:9567489567489578541107Ethanoligenens harbinense YUAN-3 chromosome, complete genomeresponse regulator receiver and SARP domain protein8e-1166.6
NC_015703:2693463:270975827097582710495738Runella slithyformis DSM 19594 chromosome, complete genomeLytTR family two component transcriptional regulator8e-1166.6
NC_019968:1304450:131481713148171315533717Prevotella dentalis DSM 3688 chromosome 2, complete sequenceresponse regulator of the LytR/AlgR family3e-1064.7
NC_019968:1084288:112808911280891128805717Prevotella dentalis DSM 3688 chromosome 2, complete sequenceresponse regulator of the LytR/AlgR family3e-1064.7
NC_013222:2795919:281526028152602815907648Robiginitalea biformata HTCC2501, complete genometwo-component system response regulator protein4e-1064.7
NC_009785:387910:407897407897408631735Streptococcus gordonii str. Challis substr. CH1, complete genomeResponse regulator of the LytR/AlgR family5e-1064.3
NC_015167:313506:335892335892336584693Cellulophaga lytica DSM 7489 chromosome, complete genomeLytTR family two component transcriptional regulator5e-1064.3
NC_007907:2249607:225088322508832251608726Desulfitobacterium hafniense Y51, complete genomehypothetical protein6e-1063.9
NC_017025:1735835:174216717421671742898732Flavobacterium indicum GPTSA100-9, complete genomeTwo-component system response regulatory protein, LytTR family5e-1063.9
NC_020272:3187482:3201383320138332024591077Bacillus amyloliquefaciens IT-45, complete genomeresponse regulator MprA1e-0962.8
NC_018868:2867500:286792228679222868728807Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeresponse regulator1e-0962.8
NC_012778:1946924:197010019701001970786687Eubacterium eligens ATCC 27750, complete genometwo-component system, LytT family, response regulator LytT3e-0961.6
NC_014219:999648:1007214100721410083561143Bacillus selenitireducens MLS10 chromosome, complete genomeresponse regulator receiver and SARP domain protein3e-0961.6
NC_015703:4483500:449270544927054493430726Runella slithyformis DSM 19594 chromosome, complete genomeLytTR family two component transcriptional regulator4e-0961.2
NC_014614:608946:611958611958612692735Clostridium sticklandii, complete genomehypothetical protein4e-0961.2
NC_020126:7686076:768779776877977688558762Myxococcus stipitatus DSM 14675, complete genomeDNA-binding response regulator4e-0961.2
NC_013406:347995:347995347995348765771Paenibacillus sp. Y412MC10 chromosome, complete genomeresponse regulator receiver and SARP domain-containing protein4e-0961.2
NC_007677:324000:344731344731345489759Salinibacter ruber DSM 13855, complete genomealginate biosynthesis regulatory protein4e-0961.2
NC_014616:54500:567695676957485717Bifidobacterium bifidum S17 chromosome, complete genometwo-component response regulator6e-0960.5
NC_014933:3715467:371826637182663718967702Bacteroides helcogenes P 36-108 chromosome, complete genometwo component transcriptional regulator, LytTR family6e-0960.5
NC_015311:403281:438961438961439716756Prevotella denticola F0289 chromosome, complete genomeLytTr DNA-binding domain-containing protein7e-0960.5
NC_014376:1842290:186064418606441861369726Clostridium saccharolyticum WM1 chromosome, complete genometwo component transcriptional regulator, LytTR family9e-0960.1
NC_007644:2205599:2207418220741822090641647Moorella thermoacetica ATCC 39073, complete genometwo component transcriptional regulator, AraC family8e-0960.1
NC_013037:6209424:621057962105796211313735Dyadobacter fermentans DSM 18053, complete genometwo component transcriptional regulator, LytTR family1e-0859.7
NC_015690:8614000:862677486267748627514741Paenibacillus mucilaginosus KNP414 chromosome, complete genometwo-component response regulator2e-0859.3
NC_015589:2281054:228878522887852289513729Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeLytTr DNA-binding protein2e-0858.9
NC_012004:470492:477357477357478097741Streptococcus uberis 0140J, complete genomeresponse regulator protein3e-0858.5
NC_015589:3852217:386341738634173864118702Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeresponse regulator receiver2e-0858.5
NC_012917:3565268:357072135707213571437717Pectobacterium carotovorum subsp. carotovorum PC1, complete genometwo component transcriptional regulator, LytTR family3e-0858.2
NC_016641:4011000:402209840220984022772675Paenibacillus terrae HPL-003 chromosome, complete genomewinged helix family two component transcriptional regulator4e-0858.2
NC_006177:2211458:2225941222594122273351395Symbiobacterium thermophilum IAM 14863, complete genomesigma-54-dependent transcriptional regulator5e-0857.8
NC_014376:3796990:380806238080623808787726Clostridium saccharolyticum WM1 chromosome, complete genometwo component transcriptional regulator, LytTR family4e-0857.8
NC_010718:2265447:226544722654472266163717Natranaerobius thermophilus JW/NM-WN-LF, complete genometwo component transcriptional regulator, LytTR family4e-0857.8
NC_013526:316075:3363983363983404894092Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomePAS/PAC sensor hybrid histidine kinase5e-0857.4
NC_012880:1091486:109317110931711093896726Dickeya dadantii Ech703, complete genometwo component transcriptional regulator, LytTR family6e-0857.4
NC_018721:2872780:287278028727802873505726Psychroflexus torquis ATCC 700755 chromosome, complete genometwo-component system response regulator, LytR/AlgR family8e-0857
NC_021182:1473535:147521614752161475986771Clostridium pasteurianum BC1, complete genomeresponse regulator of the LytR/AlgR family8e-0857
NC_009615:2902871:292380429238042924535732Parabacteroides distasonis ATCC 8503 chromosome, complete genometwo-component response regulator8e-0857
NC_015275:3407358:342575034257503426475726Clostridium lentocellum DSM 5427 chromosome, complete genometwo component transcriptional regulator, LytTR family8e-0857
NC_020054:3501467:351843235184323519181750Fibrella aestuarina BUZ 2 drat genometwo component transcriptional regulator, LytTR family7e-0857
NC_020291:1045058:1049931104993110514631533Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genometwo component transcriptional regulator, AraC family7e-0857
NC_014032:338547:361332361332362084753Salinibacter ruber M8 chromosome, complete genomesensory transduction protein lytT2e-0755.8
NC_006347:2190000:219573921957392196437699Bacteroides fragilis YCH46, complete genometwo-component system response regulator2e-0755.8
NC_003228:2245181:225199322519932252691699Bacteroides fragilis NCTC 9343, complete genomeputative two-component system response regulator2e-0755.8
NC_016776:2237404:224442922444292245127699Bacteroides fragilis 638R, complete genomeputative two-component system response regulator2e-0755.8
NC_018515:1406816:141371214137121414566855Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeresponse regulator containing CheY-like receiver and SARP domains2e-0755.8
NC_016609:5890292:591878759187875919545759Niastella koreensis GR20-10 chromosome, complete genomeLytTR family two component transcriptional regulator2e-0755.8
NC_009613:781180:7888217888217899841164Flavobacterium psychrophilum JIP02/86, complete genomesigma-54 dependent two-component system response regulatory protein1e-0755.8
NC_016641:945284:962368962368963090723Paenibacillus terrae HPL-003 chromosome, complete genomeDegU family transcriptional regulator3e-0755.1
NC_011080:4177443:4177443417744341788521410Salmonella enterica subsp. enterica serovar Newport str. SL254,nitrogen regulation protein NR3e-0755.1
NC_020126:7285452:7290860729086072923531494Myxococcus stipitatus DSM 14675, complete genomeFis family transcriptional regulator3e-0754.7
NC_014219:999648:99964899964810007811134Bacillus selenitireducens MLS10 chromosome, complete genomeresponse regulator receiver and SARP domain protein5e-0754.3
NC_015687:1811573:181561018156101816371762Clostridium acetobutylicum DSM 1731 chromosome, complete genomeresponse regulator5e-0754.3
NC_003030:1811820:181401018140101814771762Clostridium acetobutylicum ATCC 824, complete genomeResponse regulator (CheY-like receiver domain and DNA-binding HTH domain)5e-0754.3
NC_017295:1809386:181342318134231814184762Clostridium acetobutylicum EA 2018 chromosome, complete genomeResponse regulator (CheY-like receiver domain and DNA-binding HTH domain)5e-0754.3
NC_010814:1390817:1412795141279514141831389Geobacter lovleyi SZ, complete genometwo component, sigma54 specific, transcriptional regulator, Fis family5e-0754.3
NC_014844:2828370:2846565284656528477011137Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeresponse regulator receiver5e-0754.3
NC_002939:1634843:1640718164071816420941377Geobacter sulfurreducens PCA, complete genomesigma-54 dependent DNA-binding response regulator4e-0754.3
NC_019897:2908971:294061329406132941176564Thermobacillus composti KWC4 chromosome, complete genomeresponse regulator with CheY-like receiver domain and winged-helix DNA-binding domain4e-0754.3
NC_014624:828943:848383848383849072690Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein6e-0753.9
NC_019908:2496149:2505557250555725068371281Brachyspira pilosicoli P43/6/78 chromosome, complete genomeUDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase1e-0653.1
NC_015977:3424178:347591234759123476646735Roseburia hominis A2-183 chromosome, complete genometwo-component system response regulator protein1e-0653.1
NC_004663:1499145:151426015142601514958699Bacteroides thetaiotaomicron VPI-5482, complete genometwo-component system response regulator1e-0653.1
NC_016940:470163:502234502234502953720Saprospira grandis str. Lewin chromosome, complete genometwo component transcriptional regulator, LytTR family protein9e-0753.1
NC_014330:697429:7117697117697130491281Brachyspira pilosicoli 95/1000 chromosome, complete genomeUDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase1e-0652.8
NC_014393:1421122:1427612142761214287121101Clostridium cellulovorans 743B chromosome, complete genomeresponse regulator receiver and SARP domain-containing protein1e-0652.8
NC_014355:2210884:2216919221691922183341416Candidatus Nitrospira defluvii, complete genomesigma-54 dependent DNA-binding response regulator1e-0652.8
NC_012804:1431465:143651614365161436884369Thermococcus gammatolerans EJ3, complete genomeChemotaxis response regulator (cheY)1e-0652.8
NC_014972:1982315:1997310199731019986831374Desulfobulbus propionicus DSM 2032 chromosome, complete genomeFis family two component sigma54 specific transcriptional regulator1e-0652.8
NC_014538:985339:9853399853399869311593Thermoanaerobacter sp. X513 chromosome, complete genomeAraC family two component transcriptional regulator2e-0652.4
NC_010320:1949852:1967413196741319690051593Thermoanaerobacter sp. X514 chromosome, complete genomeresponse regulator receiver protein2e-0652.4
NC_015966:2337833:2370093237009323715231431Rhodothermus marinus SG0.5JP17-172 chromosome, complete genometwo component, sigma54 specific, Fis family transcriptional regulator2e-0652.4
NC_015731:990000:100647310064731007105633Nitrosomonas sp. Is79A3 chromosome, complete genomeLuxR family two component transcriptional regulator2e-0652.4
NC_015703:4483500:449416244941624494887726Runella slithyformis DSM 19594 chromosome, complete genomeLytTR family two component transcriptional regulator2e-0652
NC_013731:11605:284162841629144729Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequencetwo component transcriptional regulator, LytTR family2e-0652
NC_019970:2080419:2097771209777120988261056Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeresponse regulator containing CheY-like receiver domain and AraC-type DNA-binding domain3e-0652
NC_015510:1234500:125508212550821255795714Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeLytTR family two component transcriptional regulator3e-0651.6
NC_014328:3823902:383822538382253838944720Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative response regulator receiver domain-containing protein3e-0651.6
NC_016791:3807740:3806658380665838077521095Clostridium sp. BNL1100 chromosome, complete genomeresponse regulator containing CheY-like receiver and SARP domains3e-0651.6
NC_013406:1640787:1643715164371516449321218Paenibacillus sp. Y412MC10 chromosome, complete genometwo component AraC family transcriptional regulator5e-0651.2
NC_011979:4293859:1404914049155991551Geobacter sp. FRC-32, complete genomemulti-sensor signal transduction histidine kinase4e-0651.2
NC_014762:1334206:134282113428211343372552Sulfuricurvum kujiense DSM 16994 chromosome, complete genomeresponse regulator receiver protein5e-0650.8
NC_008609:3672653:3699111369911137005081398Pelobacter propionicus DSM 2379, complete genometwo component, sigma54 specific, transcriptional regulator, Fis family5e-0650.8
NC_009615:2311352:231296223129622313666705Parabacteroides distasonis ATCC 8503 chromosome, complete genometwo-component system response regulator6e-0650.8
NC_007517:1561466:1565515156551515668911377Geobacter metallireducens GS-15, complete genometwo component, sigma54 specific, transcriptional regulator, Fis family7e-0650.4
NC_010814:1739706:1766648176664817680181371Geobacter lovleyi SZ, complete genometwo component, sigma54 specific, transcriptional regulator, Fis family8e-0650.4
NC_015519:488550:5070285070285086411614Tepidanaerobacter sp. Re1 chromosome, complete genomeAraC family two component transcriptional regulator8e-0650.4