Pre_GI: BLASTP Hits

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Query: NC_013316:2033906:2074593 Clostridium difficile R20291, complete genome

Start: 2074593, End: 2075183, Length: 591

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile R20291 was isolated in Stoke Mandeville Hospital, UK in 2006 and is closely related to the North American hypervirulent BI strains. Clostridium difficile, a Gram-positive, spore-forming anaerobic bacterium, is the leading cause of infectious diarrhea among patients in hospitals worldwide, causing C. difficile infection (CDI). An important nosocomial pathogen, it is frequently associated with antibiotic treatment and causes diseases ranging from antibiotic-associated diarrhea to life-threatening pseudomembraneous colitis.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018704:2417902:242905824290582429768711Amphibacillus xylanus NBRC 15112, complete genomeputative two-component system response regulator2e-32138
NC_009089:1283000:128229312822931283006714Clostridium difficile 630, complete genometwo-component response regulator2e-28125
NC_014363:1973670:198281319828131983520708Olsenella uli DSM 7084 chromosome, complete genometwo component transcriptional regulator, LytTR family3e-27121
NC_013174:501326:500595500595501329735Jonesia denitrificans DSM 20603, complete genometwo component transcriptional regulator, LytTR family5e-27120
NC_016048:308342:328892328892329599708Oscillibacter valericigenes Sjm18-20, complete genomeputative two-component response regulator9e-22103
NC_016627:1485799:149181114918111492536726Clostridium clariflavum DSM 19732 chromosome, complete genomeresponse regulator of the LytR/AlgR family2e-21102
NC_014934:11341:366453664537337693Cellulophaga algicola DSM 14237 chromosome, complete genometwo component transcriptional regulator, lyttr family4e-2097.8
NC_013222:2795919:281526028152602815907648Robiginitalea biformata HTCC2501, complete genometwo-component system response regulator protein4e-2097.8
NC_016894:77853:840308403084764735Acetobacterium woodii DSM 1030 chromosome, complete genometwo component transcriptional regulator5e-2097.4
NC_014614:608946:611958611958612692735Clostridium sticklandii, complete genomehypothetical protein9e-2096.7
NC_009922:42696:456394563946355717Alkaliphilus oremlandii OhILAs, complete genometwo component transcriptional regulator, LytTR family3e-1994.7
NC_015167:313506:335892335892336584693Cellulophaga lytica DSM 7489 chromosome, complete genomeLytTR family two component transcriptional regulator1e-1892.8
NC_007907:2249607:225088322508832251608726Desulfitobacterium hafniense Y51, complete genomehypothetical protein6e-1890.5
NC_015275:3407358:342575034257503426475726Clostridium lentocellum DSM 5427 chromosome, complete genometwo component transcriptional regulator, LytTR family3e-1788.6
NC_008261:576923:593925593925594641717Clostridium perfringens ATCC 13124, complete genomeDNA-binding response regulator4e-1787.8
NC_014152:2849991:286797228679722868697726Thermincola sp. JR, complete genometwo component transcriptional regulator, LytTR family4e-1787.8
NC_014376:1842290:186064418606441861369726Clostridium saccharolyticum WM1 chromosome, complete genometwo component transcriptional regulator, LytTR family1e-1686.7
NC_014376:3796990:380806238080623808787726Clostridium saccharolyticum WM1 chromosome, complete genometwo component transcriptional regulator, LytTR family2e-1685.5
NC_016048:375676:399488399488400183696Oscillibacter valericigenes Sjm18-20, complete genomeputative two-component response regulator4e-1684.7
NC_014624:287500:304428304428305174747Eubacterium limosum KIST612 chromosome, complete genomeResponse regulator of the LytR/AlgR family4e-1684.3
NC_010658:2529033:255507825550782555812735Shigella boydii CDC 3083-94, complete genomeresponse regulator6e-1684
NC_008258:2473000:249696424969642497698735Shigella flexneri 5 str. 8401, complete genomeputative 2-component transcriptional regulator6e-1684
NC_004337:2478461:250322425032242503958735Shigella flexneri 2a str. 301, complete genomeputative 2-component transcriptional regulator6e-1684
CP002516:1419413:142028314202831421017735Escherichia coli KO11, complete genometwo component transcriptional regulator, LytTR family6e-1684
NC_013941:2928000:296958729695872970321735Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein6e-1684
NC_016822:2678691:270562327056232706357735Shigella sonnei 53G, complete genomeLytTR family two component transcriptional regulator6e-1684
NC_016902:1419413:142028314202831421017735Escherichia coli KO11FL chromosome, complete genomeLytTR family two component transcriptional regulator6e-1684
NC_009615:2311352:231296223129622313666705Parabacteroides distasonis ATCC 8503 chromosome, complete genometwo-component system response regulator1e-1582.8
NC_012778:207415:217309217309218022714Eubacterium eligens ATCC 27750, complete genometwo-component system, LytT family, response regulator1e-1582.8
NC_015311:403281:438961438961439716756Prevotella denticola F0289 chromosome, complete genomeLytTr DNA-binding domain-containing protein2e-1582.4
NC_015172:850802:866232866232866960729Syntrophobotulus glycolicus DSM 8271 chromosome, complete genometwo component transcriptional regulator, LytTR family2e-1582
NC_004663:1499145:151426015142601514958699Bacteroides thetaiotaomicron VPI-5482, complete genometwo-component system response regulator3e-1581.6
NC_014933:3715467:371826637182663718967702Bacteroides helcogenes P 36-108 chromosome, complete genometwo component transcriptional regulator, LytTR family3e-1581.6
NC_011898:3159411:319241031924103193168759Clostridium cellulolyticum H10, complete genometwo component transcriptional regulator, LytTR family6e-1580.5
NC_014376:2921769:293831329383132939053741Clostridium saccharolyticum WM1 chromosome, complete genometwo component transcriptional regulator, LytTR family1e-1479.3
NC_014624:3316916:332634833263483326935588Eubacterium limosum KIST612 chromosome, complete genomeLytTR family two component transcriptional regulator2e-1479
NC_016776:2237404:224442922444292245127699Bacteroides fragilis 638R, complete genomeputative two-component system response regulator8e-1477
NC_003228:2245181:225199322519932252691699Bacteroides fragilis NCTC 9343, complete genomeputative two-component system response regulator8e-1477
NC_006347:2190000:219573921957392196437699Bacteroides fragilis YCH46, complete genometwo-component system response regulator8e-1477
NC_014616:54500:567695676957485717Bifidobacterium bifidum S17 chromosome, complete genometwo-component response regulator1e-1376.6
NC_016940:470163:502234502234502953720Saprospira grandis str. Lewin chromosome, complete genometwo component transcriptional regulator, LytTR family protein1e-1376.6
NC_009616:99647:116610116610117290681Thermosipho melanesiensis BI429 chromosome, complete genomeLytTR family two component transcriptional regulator2e-1375.9
NC_015510:1234500:125002412500241250725702Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeLytTR family two component transcriptional regulator2e-1375.5
NC_009828:600349:601856601856602527672Thermotoga lettingae TMO, complete genometwo component transcriptional regulator, LytTR family2e-1375.5
NC_010520:1146000:116684911668491167565717Clostridium botulinum A3 str. Loch Maree, complete genomeLytTr DNA-binding domain family2e-1375.5
NC_015977:3424178:347917734791773479884708Roseburia hominis A2-183 chromosome, complete genomeresponse regulator of the lytr/algr family protein2e-1375.1
NC_012563:3729817:376253737625373763301765Clostridium botulinum A2 str. Kyoto, complete genomeDNA-binding response regulator, LytTr family5e-1374.3
NC_006510:1501487:152070415207041521444741Geobacillus kaustophilus HTA426, complete genometranscriptional regulator5e-1374.3
NC_009699:3581376:361409836140983614862765Clostridium botulinum F str. Langeland chromosome, complete genomeLytTr family DNA-binding response regulator4e-1374.3
NC_017297:3594000:361271236127123613476765Clostridium botulinum F str. 230613 chromosome, complete genomeDNA-binding response regulator, LytTr family4e-1374.3
NC_010520:3580000:359767035976703598434765Clostridium botulinum A3 str. Loch Maree, complete genomeDNA-binding response regulator, LytTr family7e-1373.6
NC_013061:1856969:187473818747381875517780Pedobacter heparinus DSM 2366, complete genomeLytTr DNA-binding region2e-1272.8
NC_009697:3463736:349645534964553497219765Clostridium botulinum A str. ATCC 19397 chromosome, completeLytTr family DNA-binding response regulator2e-1272.4
NC_009495:3502000:352046735204673521231765Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeDNA-binding response regulator, LytTr family2e-1272.4
NC_015510:1234500:125508212550821255795714Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeLytTR family two component transcriptional regulator2e-1272.4
NC_019968:1084288:112808911280891128805717Prevotella dentalis DSM 3688 chromosome 2, complete sequenceresponse regulator of the LytR/AlgR family2e-1272
NC_019968:1304450:131481713148171315533717Prevotella dentalis DSM 3688 chromosome 2, complete sequenceresponse regulator of the LytR/AlgR family2e-1272
NC_018868:2615822:263686726368672637601735Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomealginate biosynthesis regulatory protein AlgR3e-1271.6
NC_016751:1700164:172001917200191720765747Marinitoga piezophila KA3 chromosome, complete genomeresponse regulator of the LytR/AlgR family3e-1271.6
NC_004668:3053119:306801830680183068746729Enterococcus faecalis V583, complete genomeresponse regulator4e-1271.2
NC_017316:2581781:259771425977142598442729Enterococcus faecalis OG1RF chromosome, complete genomeresponse regulator5e-1270.9
NC_020126:8984500:898947889894788990179702Myxococcus stipitatus DSM 14675, complete genometwo component transcriptional regulator, LytTR family protein6e-1270.5
NC_013037:6209424:621057962105796211313735Dyadobacter fermentans DSM 18053, complete genometwo component transcriptional regulator, LytTR family6e-1270.5
NC_015510:6653159:666073866607386661478741Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeLytTR family two component transcriptional regulator1e-1169.7
NC_018721:2872780:287278028727802873505726Psychroflexus torquis ATCC 700755 chromosome, complete genometwo-component system response regulator, LytR/AlgR family1e-1169.7
NC_014633:583858:604072604072604797726Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequenceLytTR family two component transcriptional regulator1e-1169.7
NC_008536:1778500:179196917919691792745777Solibacter usitatus Ellin6076, complete genomeresponse regulator receiver protein1e-1169.7
NC_015177:2972701:297270129727012973447747Pedobacter saltans DSM 12145 chromosome, complete genometwo component transcriptional regulator, LytTR family2e-1169.3
NC_014633:837588:857228857228857983756Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequenceLytTR family two component transcriptional regulator2e-1168.6
NC_016776:3798108:379737437973743798111738Bacteroides fragilis 638R, complete genomeputative two-component system, response regulator2e-1168.6
NC_006347:3843228:384459438445943845331738Bacteroides fragilis YCH46, complete genometwo-component system response regulator2e-1168.6
NC_013194:1040197:105397910539791054695717Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completetwo component transcriptional regulator, LytTR family3e-1168.6
NC_003228:3752035:375130137513013752038738Bacteroides fragilis NCTC 9343, complete genomeputative two-component system, response regulator3e-1168.2
NC_010718:2265447:226544722654472266163717Natranaerobius thermophilus JW/NM-WN-LF, complete genometwo component transcriptional regulator, LytTR family3e-1168.2
NC_013730:1074393:108006810800681080817750Spirosoma linguale DSM 74, complete genometwo component transcriptional regulator, LytTR family6e-1167.4
NC_013730:2558999:258794825879482588718771Spirosoma linguale DSM 74, complete genometwo component transcriptional regulator, LytTR family7e-1167
NC_007677:324000:344731344731345489759Salinibacter ruber DSM 13855, complete genomealginate biosynthesis regulatory protein7e-1167
NC_018868:2867500:286792228679222868728807Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeresponse regulator7e-1167
NC_015589:3852217:386341738634173864118702Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeresponse regulator receiver8e-1167
NC_020054:3501467:351843235184323519181750Fibrella aestuarina BUZ 2 drat genometwo component transcriptional regulator, LytTR family8e-1167
NC_015589:2281054:228878522887852289513729Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeLytTr DNA-binding protein1e-1066.6
NC_015703:2693463:270975827097582710495738Runella slithyformis DSM 19594 chromosome, complete genomeLytTR family two component transcriptional regulator1e-1066.2
NC_007333:3360000:336380033638003364594795Thermobifida fusca YX, complete genomeresponse regulator receiver1e-1066.2
NC_007644:1638083:165823516582351658972738Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, LytR/AlgR family1e-1066.2
NC_009785:387910:407897407897408631735Streptococcus gordonii str. Challis substr. CH1, complete genomeResponse regulator of the LytR/AlgR family2e-1065.5
NC_013037:5442131:545847354584735459195723Dyadobacter fermentans DSM 18053, complete genometwo component transcriptional regulator, LytTR family4e-1064.7
NC_020126:7686076:768779776877977688558762Myxococcus stipitatus DSM 14675, complete genomeDNA-binding response regulator5e-1064.3
NC_020260:1111130:112837811283781129103726Cronobacter sakazakii Sp291, complete genometwo-component response-regulatory protein YehT9e-1063.5
NC_009778:1070000:108629010862901087015726Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein2e-0962.8
NC_015687:1811573:181561018156101816371762Clostridium acetobutylicum DSM 1731 chromosome, complete genomeresponse regulator4e-0961.2
NC_003030:1811820:181401018140101814771762Clostridium acetobutylicum ATCC 824, complete genomeResponse regulator (CheY-like receiver domain and DNA-binding HTH domain)4e-0961.2
NC_017295:1809386:181342318134231814184762Clostridium acetobutylicum EA 2018 chromosome, complete genomeResponse regulator (CheY-like receiver domain and DNA-binding HTH domain)4e-0961.2
NC_013731:11605:284162841629144729Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequencetwo component transcriptional regulator, LytTR family4e-0961.2
NC_011750:919953:938353938353939072720Escherichia coli IAI39 chromosome, complete genomeputative two-component response-regulatory protein YehT5e-0960.8
NC_013008:2889743:288902728890272889746720Escherichia coli O157:H7 str. TW14359 chromosome, complete genometwo-component response-regulatory protein YehT8e-0960.5
NC_002695:2893951:289323528932352893954720Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein8e-0960.5
NC_014387:281157:282005282005282703699Butyrivibrio proteoclasticus B316 chromosome 1, complete genomeLytTR/response regulator domain-containing protein9e-0960.1
NC_018515:1406816:141371214137121414566855Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeresponse regulator containing CheY-like receiver and SARP domains1e-0859.7
NC_009617:648000:666775666775667533759Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeLytTR family two component transcriptional regulator3e-0858.5
NC_016609:4331359:434517843451784345930753Niastella koreensis GR20-10 chromosome, complete genomeLytTR family two component transcriptional regulator3e-0858.5
NC_011830:3904034:392032539203253921080756Desulfitobacterium hafniense DCB-2, complete genometwo component transcriptional regulator, LytTR family4e-0858.2
NC_020272:3187482:3201383320138332024591077Bacillus amyloliquefaciens IT-45, complete genomeresponse regulator MprA4e-0857.8
NC_021182:1473535:147521614752161475986771Clostridium pasteurianum BC1, complete genomeresponse regulator of the LytR/AlgR family5e-0857.4
NC_014219:999648:99964899964810007811134Bacillus selenitireducens MLS10 chromosome, complete genomeresponse regulator receiver and SARP domain protein6e-0857.4
NC_008009:1264791:126479112647911265579789Acidobacteria bacterium Ellin345, complete genometranscriptional regulator, LytR/AlgR family6e-0857.4
NC_014219:999648:1007214100721410083561143Bacillus selenitireducens MLS10 chromosome, complete genomeresponse regulator receiver and SARP domain protein9e-0856.6
NC_012917:3565268:357072135707213571437717Pectobacterium carotovorum subsp. carotovorum PC1, complete genometwo component transcriptional regulator, LytTR family1e-0756.2
NC_017025:1735835:174216717421671742898732Flavobacterium indicum GPTSA100-9, complete genomeTwo-component system response regulatory protein, LytTR family1e-0756.2
NC_007907:2879568:289297128929712893726756Desulfitobacterium hafniense Y51, complete genomehypothetical protein1e-0756.2
NC_015703:4483500:449416244941624494887726Runella slithyformis DSM 19594 chromosome, complete genomeLytTR family two component transcriptional regulator3e-0755.1
NC_018691:2410779:242736024273602427854495Alcanivorax dieselolei B5 chromosome, complete genomeSensory box protein/response regulator7e-0753.9
NC_014032:338547:361332361332362084753Salinibacter ruber M8 chromosome, complete genomesensory transduction protein lytT7e-0753.9
NC_012880:1091486:109317110931711093896726Dickeya dadantii Ech703, complete genometwo component transcriptional regulator, LytTR family1e-0653.1
NC_015690:8614000:862677486267748627514741Paenibacillus mucilaginosus KNP414 chromosome, complete genometwo-component response regulator1e-0653.1
NC_016751:1623756:162375616237561624418663Marinitoga piezophila KA3 chromosome, complete genomeresponse regulator with CheY-like receiver domain and winged-helix DNA-binding domain2e-0652.8
NC_009792:642881:644563644563645282720Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein1e-0652.8
NC_009850:445000:4533724533724551981827Arcobacter butzleri RM4018, complete genometwo-component response regulator1e-0652.8
NC_015703:4483500:449270544927054493430726Runella slithyformis DSM 19594 chromosome, complete genomeLytTR family two component transcriptional regulator1e-0652.8
NC_015856:3536441:356048135604813561233753Collimonas fungivorans Ter331 chromosome, complete genomeputative two-component response regulator transcription protein2e-0652.4
NC_014393:1421122:1427612142761214287121101Clostridium cellulovorans 743B chromosome, complete genomeresponse regulator receiver and SARP domain-containing protein2e-0652.4
NC_017187:422698:4309904309904328161827Arcobacter butzleri ED-1, complete genometwo-component response regulator2e-0652
NC_009850:628024:633654633654634346693Arcobacter butzleri RM4018, complete genometwo-component response regulator4e-0651.2
NC_007575:973559:975967975967976665699Sulfurimonas denitrificans DSM 1251, complete genomeLytR/AlgR family transcriptional regulator4e-0651.2
NC_021184:549940:558479558479559138660Desulfotomaculum gibsoniae DSM 7213, complete genomeresponse regulator with CheY-like receiver domain and winged-helix DNA-binding domain4e-0651.2
NC_014328:3823902:383822538382253838944720Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative response regulator receiver domain-containing protein4e-0651.2
NC_016609:2951301:298003529800352980781747Niastella koreensis GR20-10 chromosome, complete genomeLytTR family two component transcriptional regulator5e-0650.8
NC_013730:2490000:250045225004522501119668Spirosoma linguale DSM 74, complete genome5e-0650.8
NC_012984:3077004:308966030896603090403744Lactobacillus plantarum JDM1, complete genomeresponse regulator; accesory gene regulator protein A6e-0650.8
NC_009454:1389974:139536613953661396043678Pelotomaculum thermopropionicum SI, complete genomeresponse regulator6e-0650.8
NC_014828:943911:9567489567489578541107Ethanoligenens harbinense YUAN-3 chromosome, complete genomeresponse regulator receiver and SARP domain protein8e-0650.1