Pre_GI: BLASTP Hits

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Query: NC_010673:291679:292313 Borrelia hermsii DAH, complete genome

Start: 292313, End: 292657, Length: 345

Host Lineage: Borrelia hermsii; Borrelia; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: This strain was isolated from a case of relapsing fever in western Washington, USA. Borrelia hermsii is the causative agent of tick-borne relapsing fever in the western United States and Canada. Borrelia then multiplies rapidly, causing a generalized infection throughout the tick. While feeding, the tick passes the organism into a mammalian host through its infectious saliva. Relapsing fever is characterized by a period of chills, fever, headache, and malaise, an asymptomatic period, followed by another episode of symptoms. This cycle of relapsing is due to changes in the surface proteins of Borrelia, which allow it to avoid detection and removal by the host immune system. This antigenic variation is the result of homologous recombination of silent proteins into an expressed locus, causing partial or complete replacement of one serotype with another. These plasmids carry genes involved in antigenic variation and pathogenicity.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008710:277207:291605291605291949345Borrelia turicatae 91E135, complete genomeflagellar motor switch protein FliN3e-54209
NC_011728:269853:288944288944289285342Borrelia burgdorferi ZS7, complete genomeflagellar switch protein FliY3e-50196
NC_001318:270488:289576289576289917342Borrelia burgdorferi B31, complete genomeflagellar motor switch protein (fliN)3e-50196
NC_006156:271410:288358288358288699342Borrelia garinii PBi chromosome linear, complete sequenceflagellar motor switch protein5e-50196
NC_015921:272517:288141288141288482342Borrelia bissettii DN127 chromosome, complete genomeflagellar motor switch protein FliN6e-50195
NC_008277:272741:288467288467288808342Borrelia afzelii PKo, complete genomeflagellar motor switch protein1e-49194
NC_017238:272980:288706288706289047342Borrelia afzelii PKo chromosome, complete genomeflagellar motor switch protein FliN1e-49194
NC_000919:773784:7874217874217884671047Treponema pallidum subsp. pallidum str. Nichols, complete genomeflagellar motor switch protein (fliY)3e-28124
NC_010741:775000:7888697888697899151047Treponema pallidum subsp. pallidum SS14, complete genomeflagellar motor switch protein3e-28124
NC_016842:775368:7890057890057900511047Treponema pallidum subsp. pertenue str. SamoaD chromosome, completebifunctional chemotaxis protein CheC/flagellar motor switch protein FliY3e-28124
NC_016843:775371:7891927891927902381047Treponema pallidum subsp. pertenue str. Gauthier chromosome,bifunctional chemotaxis protein CheC/flagellar motor switch protein FliY3e-28124
NC_016848:775822:7894597894597905051047Treponema pallidum subsp. pertenue str. CDC2 chromosome, completebifunctional chemotaxis protein CheC/flagellar motor switch protein FliY3e-28124
NC_017268:775000:7886717886717897171047Treponema pallidum subsp. pallidum str. Chicago chromosome,flagellar motor switch protein3e-28124
NC_021508:775264:7889017889017899471047Treponema pallidum subsp. pallidum SS14, complete genomebifunctional chemotaxis protein CheC/flagellar motor switch protein FliY3e-28124
NC_015714:768500:7823037823037833491047Treponema paraluiscuniculi Cuniculi A chromosome, complete genomebifunctional chemotaxis protein CheC/flagellar motor switch protein FliY2e-28124
NC_016844:775334:7893597893597904051047Treponema pallidum subsp. pallidum DAL-1 chromosome, completebifunctional chemotaxis protein CheC/flagellar motor switch protein FliY2e-28124
NC_014330:1784515:1788618178861817896641047Brachyspira pilosicoli 95/1000 chromosome, complete genomeflagellar motor switch protein FliN3e-26117
NC_018604:492068:4964124964124974581047Brachyspira pilosicoli WesB complete genomeflagellar motor switch protein FliN4e-26116
NC_019908:1467000:1480929148092914819751047Brachyspira pilosicoli P43/6/78 chromosome, complete genomeflagellar motor switch protein FliN4e-26116
NC_018607:2375344:2388581238858123896271047Brachyspira pilosicoli B2904 chromosome, complete genomeflagellar motor switch protein FliN4e-26116
NC_017243:491681:5083175083175093991083Brachyspira intermedia PWS/A chromosome, complete genomeflagellar motor switch protein1e-25114
NC_014150:2201251:2215333221533322164121080Brachyspira murdochii DSM 12563 chromosome, complete genomeflagellar motor switch protein FliN1e-25114
NC_012225:1575432:1600390160039016014721083Brachyspira hyodysenteriae WA1, complete genomeflagellar motor switch protein2e-25114
NC_009012:574145:5920165920165932361221Clostridium thermocellum ATCC 27405, complete genomeCheC, inhibitor of MCP methylation1e-24112
NC_014652:628435:6479166479166490461131Caldicellulosiruptor hydrothermalis 108 chromosome, completechec, inhibitor of mcp methylation / flin fusion protein2e-24111
NC_016751:1979201:1993227199322719946031377Marinitoga piezophila KA3 chromosome, complete genomeflagellar motor switch protein FliN7e-23105
NC_014150:2201251:221656222165622216894333Brachyspira murdochii DSM 12563 chromosome, complete genome5e-22102
NC_009633:2725128:2725128272512827263091182Alkaliphilus metalliredigens QYMF chromosome, complete genomeflagellar motor switch protein3e-21100
NC_010723:801215:8012158012158023661152Clostridium botulinum E3 str. Alaska E43, complete genomeflagellar motor switch protein FliN5e-2199.8
NC_012225:1575432:159993915999391600193255Brachyspira hyodysenteriae WA1, complete genomeflagellar motor switch protein1e-2098.2
NC_014328:1046958:1058621105862110598261206Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative flagellar motor switch protein1e-2098.2
NC_009698:2727203:2743920274392027450801161Clostridium botulinum A str. Hall chromosome, complete genomeflagellar motor switch protein4e-2096.7
NC_009697:2790277:2806994280699428081541161Clostridium botulinum A str. ATCC 19397 chromosome, completeflagellar motor switch protein4e-2096.7
NC_009495:2876865:2893582289358228947421161Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeflagellar motor switch protein4e-2096.7
NC_012563:3090954:3107671310767131088311161Clostridium botulinum A2 str. Kyoto, complete genomeflagellar motor switch protein FliN4e-2096.7
NC_012658:2930244:2945156294515629463161161Clostridium botulinum Ba4 str. 657 chromosome, complete genomeflagellar motor switch protein4e-2096.7
NC_010516:2900057:2912728291272829138881161Clostridium botulinum B1 str. Okra, complete genomeflagellar motor switch protein FliN4e-2096.7
NC_010520:2937981:2953084295308429542441161Clostridium botulinum A3 str. Loch Maree, complete genomeflagellar motor switch protein FliN4e-2096.7
NC_009699:2901497:2917261291726129184211161Clostridium botulinum F str. Langeland chromosome, complete genomeflagellar motor switch protein4e-2096.7
NC_017297:2905138:2917398291739829185581161Clostridium botulinum F str. 230613 chromosome, complete genomeflagellar motor switch protein FliN4e-2096.7
NC_017295:2286911:2305431230543123066181188Clostridium acetobutylicum EA 2018 chromosome, complete genomeflagellar motor switch protein4e-2096.7
NC_021182:2921000:2936970293697029381181149Clostridium pasteurianum BC1, complete genomeflagellar motor switch protein FliN8e-2095.5
NC_004557:1826977:1838003183800318392531251Clostridium tetani E88, complete genomeflagellar motor switch protein1e-1995.1
NC_015425:1207314:1211758121175812130111254Clostridium botulinum BKT015925 chromosome, complete genomeflagellar motor switch protein FliN5e-1993.2
NC_016894:2931213:2937868293786829390011134Acetobacterium woodii DSM 1030 chromosome, complete genomeflagellar motor switch protein FliN4e-1993.2
NC_019978:625476:6441576441576452901134Halobacteroides halobius DSM 5150, complete genomeflagellar motor switch protein FliN6e-1992.8
NC_009664:533021:539118539118539867750Kineococcus radiotolerans SRS30216, complete genomeflagellar motor switch protein FliN8e-1992.4
NC_020291:4944835:4993760499376049949621203Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeflagellar motor switch phosphatase FliY8e-1992.4
NC_009617:4946000:4955939495593949571351197Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeflagellar motor switch protein1e-1891.7
NC_015391:2099472:2099472209947221005511080Carnobacterium sp. 17-4 chromosome, complete genomeflagellar motor switching and energizing phosphatase3e-1890.5
NC_021184:2238500:2244250224425022456381389Desulfotomaculum gibsoniae DSM 7213, complete genomeflagellar motor switch protein FliN4e-1890.1
NC_016012:561687:5662645662645673401077Candidatus Arthromitus sp. SFB-rat-Yit, complete genomeflagellar motor switch protein4e-1890.1
NC_008593:1060548:1080379108037910815691191Clostridium novyi NT, complete genomeflagellar switch protein FliY, contains CheC-like domain4e-1890.1
NC_014837:2586870:261088226108822611292411Pantoea sp. At-9b chromosome, complete genomeflagellar motor switch protein FliN5e-1889.7
NC_015913:624859:6266526266526277281077Candidatus Arthromitus sp. SFB-mouse-Japan, complete genomeflagellar motor switch phosphatase FliY6e-1889.4
NC_014562:1844268:187369818736981874105408Pantoea vagans C9-1 chromosome, complete genomeFlagellar motor switch protein fliN7e-1889.4
NC_013851:3300278:331189933118993312345447Allochromatium vinosum DSM 180 chromosome, complete genomeflagellar motor switch protein FliN2e-1788.2
NC_012880:1765920:183055418305541830964411Dickeya dadantii Ech703, complete genomeflagellar motor switch protein FliN2e-1787.8
NC_014500:3023762:306009530600953060511417Dickeya dadantii 3937 chromosome, complete genomeflagellar motor switch protein fliN3e-1787
NC_018664:1663324:1671062167106216722071146Clostridium acidurici 9a chromosome, complete genomeflagellar motor switch phosphatase FliY4e-1786.7
NC_007492:1735595:173559517355951736053459Pseudomonas fluorescens PfO-1, complete genomeflagellar motor switch protein6e-1786.3
NC_004129:1848701:185182918518291852290462Pseudomonas fluorescens Pf-5, complete genomeflagellar motor switch protein8e-1785.9
NC_010501:4080937:409817840981784098642465Pseudomonas putida W619, complete genomeflagellar motor switch protein FliN8e-1785.9
NC_017986:4374979:437796943779694378451483Pseudomonas putida ND6 chromosome, complete genomeFliN1e-1685.5
NC_009512:1691930:169493816949381695402465Pseudomonas putida F1, complete genomeflagellar motor switch protein FliN1e-1685.5
NC_002947:4931476:494885949488594949344486Pseudomonas putida KT2440, complete genomeflagellar motor switch protein1e-1685.5
NC_009654:3849774:387831938783193878780462Marinomonas sp. MWYL1, complete genomeflagellar motor switch protein FliN2e-1684.7
NC_007912:2768363:276796327679632768370408Saccharophagus degradans 2-40, complete genomesurface presentation of antigens (SpoA) protein2e-1684
NC_007519:3527207:354353235435323544059528Desulfovibrio alaskensis G20 chromosome, complete genomesurface presentation of antigens (SPOA) protein3e-1684
NC_016893:43234:584315843158850420Wigglesworthia glossinidia endosymbiont of Glossina morsitansflagellar motor switching and energizing component8e-1682.4
NC_014366:1814000:183272818327281833141414Gamma proteobacterium HdN1, complete genomeFlagellar motor switch FliN2e-1581.6
NC_020911:2921925:294418129441812944477297Octadecabacter antarcticus 307, complete genomeflagellar motor switch protein FliN2e-1581.3
NC_012440:659646:686871686871687443573Persephonella marina EX-H1, complete genomeflagellar motor switch protein FliN2e-1581.3
NC_007759:1356439:135643913564391356930492Syntrophus aciditrophicus SB, complete genomeflagellar motor switch protein2e-1580.9
NC_008576:4467745:447890444789044479317414Magnetococcus sp. MC-1, complete genomeflagellar motor switch protein FliN1e-1478.2
NC_019940:293476:298826298826299197372Thioflavicoccus mobilis 8321 chromosome, complete genomeflagellar motor switch protein FliN2e-1478.2
NC_004344:26828:572215722157628408Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis,hypothetical protein2e-1374.3
NC_013223:685628:705832705832706161330Desulfohalobium retbaense DSM 5692, complete genomeflagellar motor switch protein FliN4e-1373.6
NC_008599:1489868:149197814919781492808831Campylobacter fetus subsp. fetus 82-40, complete genomeflagellar motor switch protein5e-1373.2
NC_014758:1387470:138896413889641389248285Calditerrivibrio nitroreducens DSM 19672 chromosome, completesurface presentation of antigens (spoa) protein3e-1167.4
NC_015186:1698000:170739517073951707715321Acidiphilium multivorum AIU301, complete genomeflagellar motor switch protein FliN5e-1166.6
NC_021184:2238500:225945022594502259845396Desulfotomaculum gibsoniae DSM 7213, complete genomeflagellar motor switch/type III secretory pathway protein5e-1166.6
NC_009484:1627734:163713316371331637531399Acidiphilium cryptum JF-5 chromosome, complete genomeflagellar motor switch protein FliN6e-1166.2
NC_006677:435652:446810446810447127318Gluconobacter oxydans 621H, complete genomeflagellar motor switch protein6e-1166.2
NC_012438:1211940:124043012404301241008579Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genomeflagellar motor switch protein FliN1e-1065.1
NC_008435:1215437:130955713095571309955399Rhodopseudomonas palustris BisA53, complete genomeflagellar motor switch protein FliN3e-1063.9
NC_009253:2615777:261907526190752619461387Desulfotomaculum reducens MI-1 chromosome, complete genomesurface presentation of antigens (SPOA) protein2e-0960.8
NC_017187:1832045:183426918342691835135867Arcobacter butzleri ED-1, complete genomeflagellar motor switch protein FliY1e-0858.5
NC_009850:1954969:195604519560451956914870Arcobacter butzleri RM4018, complete genomeflagellar motor switch protein FliY2e-0857.4
NC_017192:2469667:246966724696672470548882Arcobacter sp. L, complete genomeflagellar motor switch protein FliY4e-0856.6
NC_012440:659646:666224666224666463240Persephonella marina EX-H1, complete genomeflagellar motor switch phosphatase FliY1e-0652
NC_017179:281069:301038301038301352315Clostridium difficile BI1, complete genomeflagellar motor switch protein1e-0652
NC_017187:1832045:184266018426601842947288Arcobacter butzleri ED-1, complete genomeflagellar motor switch protein FliN2e-0651.2
NC_009850:1954969:196445219644521964739288Arcobacter butzleri RM4018, complete genomeflagellar motor switch protein FliN2e-0651.2
NC_007645:4195500:422258742225874222922336Hahella chejuensis KCTC 2396, complete genomeflagellar motor switch protein3e-0650.4
NC_017192:2469667:247767524776752477962288Arcobacter sp. L, complete genomeflagellar motor switch protein FliN5e-0650.1
NC_003210:721824:728282728282728581300Listeria monocytogenes EGD-e, complete genomeflagellar motor switch protein6e-0649.7
NC_013768:721897:732506732506732808303Listeria monocytogenes 08-5923, complete genomeflagellar motor switch protein6e-0649.7
NC_013766:757987:765802765802766104303Listeria monocytogenes 08-5578 chromosome, complete genomeflagellar motor switch protein6e-0649.7
NC_003212:721112:727569727569727868300Listeria innocua Clip11262, complete genomeflagellar motor switch protein7e-0649.3
NC_002973:730942:742774742774743073300Listeria monocytogenes str. 4b F2365, complete genomeflagellar motor switch protein7e-0649.3