Pre_GI: BLASTP Hits

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Query: NC_004578:5336773:5413440 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 5413440, End: 5413844, Length: 405

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007005:5154317:5170887517088751734212535Pseudomonas syringae pv. syringae B728a, complete genomeATP-dependent helicase HrpB8e-49191
NC_010322:5349000:539303753930375393699663Pseudomonas putida GB-1 chromosome, complete genomeDEAD/DEAH box helicase4e-45179
NC_004578:5336773:5362728536272853652502523Pseudomonas syringae pv. tomato str. DC3000, complete genomeATP-dependent helicase HrpB6e-40162
NC_010322:5349000:5375561537556153780952535Pseudomonas putida GB-1 chromosome, complete genomeATP-dependent helicase HrpB1e-35147
NC_009434:608765:6527296527296551672439Pseudomonas stutzeri A1501, complete genomeATP-dependent helicase HrpB1e-33141
NC_009434:608765:6554546554546579492496Pseudomonas stutzeri A1501, complete genomeATP-dependent helicase HrpB9e-33138
NC_014935:1223817:1238837123883712413172481Nitratifractor saLSUginis DSM 16511 chromosome, complete genomeATP-dependent helicase hrpb3e-31133
NC_016622:170000:1844671844671870312565Azospirillum lipoferum 4B, complete genomeATP-dependent helicase3e-31133
NC_012587:3613162:3613162361316236156242463Rhizobium sp. NGR234, complete genomeputative ATP-dependent helicase protein1e-27121
NC_011146:3537546:3565559356555935680422484Geobacter bemidjiensis Bem, complete genomeATP-dependent helicase HrpB5e-27119
NC_003062:50756:5339053390559902601Agrobacterium tumefaciens str. C58 chromosome circular, completehypothetical protein3e-25113
NC_003304:51048:5359253592560782487Agrobacterium tumefaciens str. C58 chromosome circular, completehelicase3e-25113
NC_010498:153755:1724651724651749392475Escherichia coli SMS-3-5, complete genomeATP-dependent helicase HrpB2e-24111
NC_008255:2839147:2860958286095828631142157Cytophaga hutchinsonii ATCC 33406, complete genomeATP-dependent helicase2e-24111
NC_003047:74986:7498674986774482463Sinorhizobium meliloti 1021, complete genomeATP-DEPENDENT HELICASE PROTEIN1e-24111
AC_000091:144577:1621051621051645342430Escherichia coli W3110 DNA, complete genomepredicted ATP-dependent helicase4e-24110
NC_000913:144577:1621051621051645342430Escherichia coli K12, complete genomepredicted ATP-dependent helicase4e-24110
NC_010468:3835259:3835259383525938377332475Escherichia coli ATCC 8739, complete genomeATP-dependent helicase HrpB4e-24110
NC_015183:51500:5408854088565742487Agrobacterium sp. H13-3 chromosome, complete genomehelicase4e-24110
NC_013364:143492:1636371636371660662430Escherichia coli O111:H- str. 11128, complete genomeputative ATP-dependent helicase HrpB4e-24110
NC_013361:145461:1648351648351672642430Escherichia coli O26:H11 str. 11368 chromosome, complete genomeATP-dependent RNA helicase HrpB4e-24110
NC_011741:145276:1623481623481647772430Escherichia coli IAI1 chromosome, complete genomeATP-dependent RNA helicase HrpB4e-24110
CU928160:145276:1623481623481647772430Escherichia coli IAI1 chromosome, complete genomeATP-dependent (RNA) helicase4e-24110
NC_010473:118681:1362091362091386382430Escherichia coli str. K-12 substr. DH10B, complete genomepredicted ATP-dependent helicase4e-24110
NC_012759:144576:1621041621041645332430Escherichia coli BW2952 chromosome, complete genomeATP-dependent RNA helicase HrpB4e-24110
NC_011415:146397:1634241634241658982475Escherichia coli SE11 chromosome, complete genomeATP-dependent RNA helicase HrpB3e-24110
NC_008563:149709:1680821680821705562475Escherichia coli APEC O1, complete genomeATP-dependent helicase HrpB2e-24110
NC_007946:149733:1681061681061705802475Escherichia coli UTI89, complete genomeATP-dependent helicase HrpB2e-24110
NC_011745:149594:1681061681061705352430Escherichia coli ED1a chromosome, complete genomeATP-dependent RNA helicase HrpB2e-24110
NC_011601:149428:1679291679291703582430Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeATP-dependent RNA helicase HrpB2e-24110
NC_011742:149732:1681501681501705792430Escherichia coli S88 chromosome, complete genomeATP-dependent RNA helicase HrpB2e-24110
NC_008253:149693:1675541675541699832430Escherichia coli 536, complete genomeATP-dependent helicase HrpB2e-24110
NC_004431:153907:1726091726091750832475Escherichia coli CFT073, complete genomeATP-dependent helicase hrpB3e-24110
NC_011740:165363:1840911840911865202430Escherichia fergusonii ATCC 35469, complete genomeATP-dependent (RNA) helicase3e-24110
NC_017030:6252756:6274408627440862769722565Corallococcus coralloides DSM 2259 chromosome, complete genomeATP-dependent helicase5e-24109
NC_012967:145582:1649561649561673852430Escherichia coli B str. REL606 chromosome, complete genomeATP-dependent RNA helicase HrpB5e-24109
NC_010994:57362:5870058700611652466Rhizobium etli CIAT 652, complete genomeATP-dependent helicase protein5e-24109
NC_007761:57199:5854958549610142466Rhizobium etli CFN 42, complete genomehelicase protein4e-24109
NC_011750:156799:1735901735901760192430Escherichia coli IAI39 chromosome, complete genomeATP-dependent RNA helicase HrpB4e-24109
NC_012850:4422966:4424964442496444274292466Rhizobium leguminosarum bv. trifolii WSM1325, complete genomeATP-dependent helicase HrpB1e-23108
NC_008380:58232:5958359583620482466Rhizobium leguminosarum bv. viciae 3841, complete genomeputative ATP-dependent helicase protein7e-24108
CU928145:143755:1622061622061646352430Escherichia coli 55989 chromosome, complete genomeATP-dependent (RNA) helicase3e-23107
AP010958:143358:1635031635031659322430Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted ATP-dependent helicase HrpB3e-23107
NC_011748:143755:1622061622061646352430Escherichia coli 55989, complete genomeATP-dependent RNA helicase HrpB3e-23107
NC_009801:143426:1635711635711660002430Escherichia coli E24377A, complete genomeATP-dependent helicase HrpB3e-23107
NC_013353:143358:1635031635031659322430Escherichia coli O103:H2 str. 12009, complete genomeATP-dependent helicase HrpB3e-23107
CP002185:146389:1634161634161658902475Escherichia coli W, complete genomepredicted ATP-dependent helicase3e-23107
NC_008609:2518993:2538856253885625413842529Pelobacter propionicus DSM 2379, complete genomeATP-dependent helicase HrpB2e-23107
NC_011184:2421687:2442040244204024445052466Vibrio fischeri MJ11 chromosome I, complete sequenceATP-dependent helicase HrpB4e-23106
NC_011985:61003:6300663006654742469Agrobacterium radiobacter K84 chromosome 1, complete genomeATP-dependent helicase HrpB3e-22103
NC_010694:962383:9623839623839648422460Erwinia tasmaniensis, complete genomeATP-dependent helicase1e-21101
NC_013961:2861949:2875468287546828779272460Erwinia amylovora, complete genomeATP-dependent RNA helicase hrpB5e-2096.3
NC_015554:3696970:3710648371064837133322685Alteromonas sp. SN2 chromosome, complete genomeATP-dependent helicase HrpB3e-1890.1
NC_013093:1036772:1056385105638510587032319Actinosynnema mirum DSM 43827, complete genomeATP-dependent helicase HrpB6e-1579.3
NC_019673:1039258:1053376105337610556882313Saccharothrix espanaensis DSM 44229 complete genomeATP-dependent helicase HrpB3e-1373.6
NC_014484:1690272:1731876173187617343892514Spirochaeta thermophila DSM 6192 chromosome, complete genomehypothetical protein2e-0961.2
NC_015953:1581542:1581542158154215840702529Streptomyces sp. SirexAA-E chromosome, complete genomeATP-dependent helicase HrpB5e-0959.7
NC_015714:542679:5656895656895676952007Treponema paraluiscuniculi Cuniculi A chromosome, complete genomeATP-dependent helicase HrpA1e-0858.9
NC_010741:546573:5695765695765715822007Treponema pallidum subsp. pallidum SS14, complete genomeATP-dependent helicase8e-0958.9
NC_000919:545141:5681445681445701502007Treponema pallidum subsp. pallidum str. Nichols, complete genomeATP-dependent helicase (hrpA)8e-0958.9
NC_016842:546661:5696655696655716712007Treponema pallidum subsp. pertenue str. SamoaD chromosome, completeATP-dependent helicase HrpA8e-0958.9
NC_016843:547149:5701535701535721592007Treponema pallidum subsp. pertenue str. Gauthier chromosome,ATP-dependent helicase HrpA8e-0958.9
NC_016844:547069:5700735700735720792007Treponema pallidum subsp. pallidum DAL-1 chromosome, completeATP-dependent helicase HrpA8e-0958.9
NC_016848:547115:5701195701195721252007Treponema pallidum subsp. pertenue str. CDC2 chromosome, completeATP-dependent helicase HrpA8e-0958.9
NC_017268:546376:5693805693805713862007Treponema pallidum subsp. pallidum str. Chicago chromosome,ATP-dependent RNA helicase HrpA8e-0958.9
NC_021508:546592:5695965695965716022007Treponema pallidum subsp. pallidum SS14, complete genomeATP-dependent helicase HrpA8e-0958.9
NC_017317:1463466:1474288147428814783434056Corynebacterium ulcerans 809 chromosome, complete genomeATP-dependent helicase8e-0855.8
NC_016802:1317365:1414529141452914184733945Corynebacterium diphtheriae HC02 chromosome, complete genomeATP-dependent helicase1e-0755.1
NC_015683:1467000:1478003147800314820584056Corynebacterium ulcerans BR-AD22 chromosome, complete genomeATP-dependent helicase2e-0754.7
NC_016789:1432000:1475241147524114791853945Corynebacterium diphtheriae PW8 chromosome, complete genomeATP-dependent helicase4e-0650.4
NC_016782:1385800:1429740142974014336843945Corynebacterium diphtheriae 241 chromosome, complete genomeATP-dependent helicase3e-0650.4
NC_016783:1397975:1450332145033214542763945Corynebacterium diphtheriae INCA 402 chromosome, complete genomeATP-dependent helicase3e-0650.4
NC_016786:1359064:1430005143000514339493945Corynebacterium diphtheriae HC01 chromosome, complete genomeATP-dependent helicase3e-0650.4
NC_016801:1422500:1471528147152814754723945Corynebacterium diphtheriae C7 (beta) chromosome, complete genomeATP-dependent helicase3e-0650.4
NC_016787:1350676:1421316142131614252603945Corynebacterium diphtheriae HC03 chromosome, complete genomeATP-dependent helicase3e-0650.4
NC_016788:1376000:1424781142478114287253945Corynebacterium diphtheriae HC04 chromosome, complete genomeATP-dependent helicase3e-0650.4
NC_016790:1345638:1397384139738414013283945Corynebacterium diphtheriae VA01 chromosome, complete genomeATP-dependent helicase3e-0650.4
NC_016800:1411000:1457879145787914618233945Corynebacterium diphtheriae BH8 chromosome, complete genomeATP-dependent helicase3e-0650.4
NC_002935:1378566:1441388144138814453413954Corynebacterium diphtheriae NCTC 13129, complete genomePutative ATP-dependent helicase9e-0648.9
NC_016785:1407892:1407892140789214118363945Corynebacterium diphtheriae CDCE 8392 chromosome, complete genomeATP-dependent helicase9e-0648.9
NC_016785:1357500:1407892140789214118363945Corynebacterium diphtheriae CDCE 8392 chromosome, complete genomeATP-dependent helicase9e-0648.9