Pre_GI Gene

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Host: NC_003062 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003062:50756 Agrobacterium tumefaciens str. C58 chromosome circular, complete

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
5075651331576hypothetical proteinBLASTP
5139251979588hypothetical proteinBLASTP
52053534981446hypothetical proteinBLASTP
53390559902601hypothetical proteinBLASTP
584875856276tRNA-AlaQuickGO ontologyBLASTP
6271462983270hypothetical proteinBLASTP
62995648031809hypothetical proteinBLASTP
64853660851233hypothetical proteinBLASTP
66350673721023hypothetical proteinBLASTP
67573686791107hypothetical proteinBLASTP
6867969461783hypothetical proteinBLASTP
6945870087630hypothetical proteinBLASTP
7072270973252hypothetical proteinBLASTP
7098771385399hypothetical proteinBLASTP
71373735592187ribonucleotide-diphosphate reductase alpha subunitQuickGO ontologyBLASTP