Pre_GI Gene

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Host: NC_003304 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003304:51048 Agrobacterium tumefaciens str. C58 chromosome circular, complete

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
5104851533486hypothetical proteinBLASTP
5159452181588two component response regulatorQuickGO ontologyBLASTP
52255535621308two component sensor kinaseQuickGO ontologyBLASTP
53592560782487helicaseQuickGO ontologyBLASTP
56740582311492SSU 16S ribosomal RNAQuickGO ontologyBLASTP
585535863280tRNA-IleQuickGO ontologyBLASTP
586885876679tRNA-AlaQuickGO ontologyBLASTP
5923859627390hypothetical proteinBLASTP
59719619752257SSU 23S ribosomal RNAQuickGO ontologyBLASTP
6223562492258hypothetical proteinBLASTP
6260662728123SSU 5S ribosomal RNAQuickGO ontologyBLASTP
629646304380tRNA-MetQuickGO ontology
63196650041809ATP-dependent DNA helicaseQuickGO ontologyBLASTP
65054662861233transcriptional regulator ROK familyQuickGO ontologyBLASTP
66551675731023ABC transporter substrate binding protein sugarQuickGO ontologyBLASTP
67774688801107ABC transporter membrane spanning protein sugarQuickGO ontologyBLASTP
6888069662783ABC transporter nucleotide bindingATPase protein sugarQuickGO ontologyBLASTP
6965970288630putative fructose transport system kinaseQuickGO ontologyBLASTP
7038570729345hypothetical protein
7092371174252glutaredoxin proteinQuickGO ontologyBLASTP
7118871586399ribonucleotide reductase stimulatory proteinQuickGO ontologyBLASTP
71679737602082ribonucleotide-diphosphate reductase alpha subunitQuickGO ontologyBLASTP