Pre_GI: BLASTP Hits

Some Help

Query: NC_004578:1719849:1739236 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 1739236, End: 1740444, Length: 1209

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007005:4515853:4516878451687845181401263Pseudomonas syringae pv. syringae B728a, complete genomeMajor facilitator superfamily3e-117422
NC_003295:199354:2301002301002313261227Ralstonia solanacearum GMI1000, complete genomePUTATIVE TRANSPORTER TRANSMEMBRANE PROTEIN3e-69262
NC_012731:2261787:2275363227536322765861224Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative MFS-family transport protein1e-68260
NC_002516:2436304:2440347244034724415551209Pseudomonas aeruginosa PAO1, complete genomemembrane protein OpdE1e-68260
NC_010322:3315024:3329835332983533310431209Pseudomonas putida GB-1 chromosome, complete genomemajor facilitator superfamily transporter2e-67256
NC_020181:1653261:1674702167470216759311230Enterobacter aerogenes EA1509E, complete genomePutative transcriptional regulator7e-67254
NC_015663:3742738:3744662374466237458911230Enterobacter aerogenes KCTC 2190 chromosome, complete genometransport protein, major facilitator superfamily (mfs)4e-66252
NC_016830:4639388:4642006464200646431691164Pseudomonas fluorescens F113 chromosome, complete genomearabinose efflux permease2e-65250
NC_002488:1638946:1667542166754216687711230Xylella fastidiosa 9a5c, complete genometranscriptional regulator2e-65249
NC_010805:530876:5523015523015535241224Burkholderia multivorans ATCC 17616 chromosome 2, completemajor facilitator family transporter2e-63243
NC_014258:355845:3737123737123749621251Pantoea vagans C9-1 plasmid pPag3, complete sequenceputative MFS family transporter7e-63241
NC_009255:1071868:1093385109338510945151131Burkholderia vietnamiensis G4 chromosome 2, complete sequencemajor facilitator transporter2e-60233
NC_010086:1907959:1921873192187319230031131Burkholderia multivorans ATCC 17616 chromosome 2, completemajor facilitator superfamily MFS_12e-60233
NC_010682:1482365:1495534149553414967451212Ralstonia pickettii 12J chromosome 1, complete sequencemajor facilitator superfamily MFS_12e-57223
NC_015379:2505233:2541831254183125430271197Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative transporter, membrane protein3e-57222
NC_011146:896000:9172499172499184031155Geobacter bemidjiensis Bem, complete genomemajor facilitator superfamily MFS_12e-56220
NC_008543:2474002:2481643248164324828391197Burkholderia cenocepacia HI2424 chromosome 2, complete sequencemajor facilitator superfamily MFS_18e-56218
NC_010515:1900967:1911466191146619126621197Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencemajor facilitator superfamily MFS_18e-56218
NC_014837:387868:4101264101264113131188Pantoea sp. At-9b chromosome, complete genomemajor facilitator superfamily protein1e-55217
NC_011750:4390000:4435348443534844365801233Escherichia coli IAI39 chromosome, complete genomeribonucleoside transporter2e-55216
NC_017328:3935185:3935185393518539365401356Shigella flexneri 2002017 chromosome, complete genomeputative Arabinose efflux permease3e-55216
NC_004337:3590323:3909526390952639108811356Shigella flexneri 2a str. 301, complete genomeputative transport protein3e-55216
CP002185:4035502:4062707406270740639451239Escherichia coli W, complete genomepredicted transporter3e-55216
NC_009792:4693152:4715984471598447172251242Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein6e-55214
NC_013008:4643825:4686028468602846872181191Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeribonucleoside transporter8e-54211
NC_013941:4470932:4514376451437645156141239Escherichia coli O55:H7 str. CB9615 chromosome, complete genomemajor facilitator family transporter9e-54211
NC_011353:4688000:4729987472998747312251239Escherichia coli O157:H7 str. EC4115 chromosome, complete genome9e-54211
NC_002695:4584177:4626883462688346281211239Escherichia coli O157:H7 str. Sakai, complete genomeputative transport protein9e-54211
NC_011601:4096427:4140655414065541418451191Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeribonucleoside transporter1e-53210
NC_013716:4306695:4340981434098143421741194Citrobacter rodentium ICC168, complete genomepurine ribonucleoside efflux pump NepI2e-53209
NC_002655:4653160:4695866469586646971041239Escherichia coli O157:H7 EDL933, complete genomeputative transport protein2e-53209
NC_021066:4177217:4191612419161241927931182Raoultella ornithinolytica B6, complete genomeribonucleoside transporter5e-52205
NC_011094:3853036:3857872385787238590651194Salmonella enterica subsp. enterica serovar Schwarzengrund strpurine ribonucleoside efflux pump NepI2e-49197
NC_010102:3919999:3925479392547939266721194Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-49197
NC_011000:2732330:2793364279336427945301167Burkholderia cenocepacia J2315 chromosome 1, complete sequencemajor facilitator superfamily protein3e-49196
NC_011149:3895921:3901897390189739030901194Salmonella enterica subsp. enterica serovar Agona str. SL483,2e-49196
NC_004631:3841975:3855707385570738569001194Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative inner membrane transport protein2e-49196
NC_003198:3855157:3870217387021738714101194Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative inner membrane transport protein2e-49196
NC_003197:3971905:3977385397738539785781194Salmonella typhimurium LT2, complete genomeputative transport protein2e-49196
NC_011083:3985618:3991594399159439927871194Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,2e-49196
NC_011080:3941909:3946745394674539479381194Salmonella enterica subsp. enterica serovar Newport str. SL254,2e-49196
NC_012125:3905782:3910618391061839118111194Salmonella enterica subsp. enterica serovar Paratyphi C strainribonucleoside transporter2e-49196
NC_016856:3985597:3991077399107739922701194Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sribonucleoside transporter2e-49196
NC_016860:3995445:4000281400028140014741194Salmonella enterica subsp. enterica serovar Typhimurium strribonucleoside transporter2e-49196
NC_016863:3933848:3938684393868439398771194Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1ribonucleoside transporter2e-49196
NC_011147:3755725:3761196376119637623891194Salmonella enterica subsp. enterica serovar Paratyphi A strribonucleoside transporter5e-49195
NC_006511:3759550:3765517376551737667101194Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative inner membrane transport protein5e-49195
NC_005363:3562205:3569679356967935708721194Bdellovibrio bacteriovorus HD100, complete genomeputative transport protein5e-46185
NC_012796:129500:1333591333591346001242Desulfovibrio magneticus RS-1, complete genomemajor facilitator superfamily protein4e-45182
NC_015458:2441435:2443907244390724451571251Pusillimonas sp. T7-7 chromosome, complete genomemajor facilitator transporter5e-44179
NC_014305:97055:1184771184771196791203Erwinia billingiae Eb661 plasmid pEB170, complete sequenceMajor facilitator superfamily1e-40167
NC_009436:1679265:1683756168375616849581203Enterobacter sp. 638, complete genomemajor facilitator transporter2e-40167
NC_015508:296856:3295873295873307951209Agrobacterium sp. H13-3 chromosome linear, complete sequenceputative transporter, permease7e-36151
NC_003888:56225:6668866688679111224Streptomyces coelicolor A3(2), complete genomeintegral membrane transport protein8e-22105
NC_010410:3719599:3744538374453837457521215Acinetobacter baumannii AYE, complete genomeputative transporter (MFS superfamily)1e-20101
NC_006361:3132000:3148815314881531500051191Nocardia farcinica IFM 10152, complete genomeputative transporter9e-21101
NC_021177:118710:1352731352731364811209Streptomyces fulvissimus DSM 40593, complete genomeArabinose efflux permease2e-20100
NC_016887:511034:5137195137195148401122Nocardia cyriacigeorgica GUH-2, complete genomeputative Transporter, MFS superfamily protein1e-1998.2
NC_008268:7576365:7585407758540775867231317Rhodococcus sp. RHA1, complete genometransporter, MFS superfamily9e-1994.7
NC_013521:2254534:2268435226843522696671233Sanguibacter keddieii DSM 10542, complete genomearabinose efflux permease family protein2e-1894
NC_016582:4934854:4938657493865749398711215Streptomyces bingchenggensis BCW-1 chromosome, complete genomeintegral membrane transport protein3e-1893.2
NC_016111:1:6122612273391218Streptomyces cattleya NRRL 8057, complete genomeIntegral membrane transport protein2e-1480.5
NC_014931:1044313:1054457105445710556591203Variovorax paradoxus EPS chromosome, complete genomemajor facilitator superfamily MFS_13e-1376.6
NC_011883:2680380:2683585268358526847751191Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,major facilitator superfamily MFS_15e-1375.9
NC_008752:725189:7598717598717610551185Acidovorax avenae subsp. citrulli AAC00-1, complete genomemajor facilitator superfamily MFS_16e-1375.9
NC_016612:443398:4503014503014515211221Klebsiella oxytoca KCTC 1686 chromosome, complete genomePutative arabinose efflux permease5e-1272.8
NC_010694:2716348:2719001271900127201881188Erwinia tasmaniensis, complete genomePutative arabinose efflux permease3e-1170.1
NC_016818:859181:8798088798088809921185Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completearabinose efflux permease family protein3e-1066.6
NC_002927:3716894:3722269372226937234531185Bordetella bronchiseptica RB50, complete genomeputative sugar efflux transpoter4e-1066.2
NC_009802:197482:2361012361012372671167Campylobacter concisus 13826, complete genomesugar efflux transporter B5e-1065.9
NC_014541:1414627:1442432144243214436131182Ferrimonas balearica DSM 9799 chromosome, complete genomemajor facilitator superfamily MFS_11e-0964.7
NC_016906:1565868:1568185156818515693601176Gordonia polyisoprenivorans VH2 chromosome, complete genomeputative major facilitator superfamily transporter1e-0964.7
NC_009436:2056000:2058184205818420593771194Enterobacter sp. 638, complete genomemajor facilitator transporter1e-0964.3
NC_011333:1236730:1239455123945512406301176Helicobacter pylori G27 chromosome, complete genomesugar efflux transporter3e-0963.2
NC_017379:1233482:1241854124185412430291176Helicobacter pylori Puno135 chromosome, complete genomeputative arabinose transporter6e-0962.4
NC_010801:238430:2429152429152441681254Burkholderia multivorans ATCC 17616 chromosome 3, completeL-arabinose/isopropyl-beta-D- thiogalactopyranoside export protein7e-0962
NC_009778:1717458:1748195174819517494691275Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein1e-0861.2
NC_009832:3500000:3517489351748935187481260Serratia proteamaculans 568, complete genomemajor facilitator superfamily MFS_12e-0860.5
NC_013446:3520500:3521846352184635230571212Comamonas testosteroni CNB-2, complete genomemajor facilitator superfamily MFS_13e-0860.1
NC_016109:8664974:8689278868927886905041227Kitasatospora setae KM-6054, complete genomeputative major facilitator superfamily transporter3e-0859.7
NC_016109:62000:9277592775940011227Kitasatospora setae KM-6054, complete genomeputative major facilitator superfamily transporter3e-0859.7
NC_009792:1479779:1501958150195815031511194Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein4e-0859.7
NC_016628:1190366:1208146120814612093271182Vibrio furnissii NCTC 11218 chromosome 2, complete sequenceMajor facilitator superfamily protein6e-0858.9
NC_016641:438500:4558594558594570581200Paenibacillus terrae HPL-003 chromosome, complete genometransporter7e-0858.9
NC_020126:4622371:4628109462810946293201212Myxococcus stipitatus DSM 14675, complete genomearabinose efflux permease9e-0858.5
NC_014532:3967463:3982718398271839839081191Halomonas elongata DSM 2581, complete genomemajor facilitator superfamily transporter2e-0757.4
NC_010067:1414000:1417881141788114190711191Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-0757.4
NC_014618:2423661:2425522242552224267181197Enterobacter cloacae SCF1 chromosome, complete genomemajor facilitator superfamily protein2e-0757
NC_017378:1175639:1184006118400611851811176Helicobacter pylori Puno120 chromosome, complete genomeputative arabinose transporter3e-0757
NC_016628:935420:9430169430169441521137Vibrio furnissii NCTC 11218 chromosome 2, complete sequenceMajor facilitator superfamily protein3e-0756.6
NC_012660:1737423:1755242175524217564291188Pseudomonas fluorescens SBW25 chromosome, complete genomeputative transporter-like membrane protein4e-0756.2
NC_019673:3559185:3566480356648035680961617Saccharothrix espanaensis DSM 44229 complete genomePermease, MFS-type4e-0756.2
NC_004129:4596040:4614170461417046153271158Pseudomonas fluorescens Pf-5, complete genomemajor facilitator family transporter4e-0756.2
NC_018691:3525430:3573541357354135747461206Alcanivorax dieselolei B5 chromosome, complete genomeArabinose efflux permease family protein6e-0755.8
NC_013169:2423863:2442283244228324435331251Kytococcus sedentarius DSM 20547, complete genomearabinose efflux permease family protein6e-0755.5
NC_013854:1686997:1688032168803216892131182Azospirillum sp. B510, complete genomeinner membrane transport protein6e-0755.5
NC_008577:1455000:1488130148813014893531224Shewanella sp. ANA-3 chromosome 1, complete sequencemajor facilitator superfamily MFS_17e-0755.5
NC_011886:1035500:1039605103960510408281224Arthrobacter chlorophenolicus A6, complete genomemajor facilitator superfamily MFS_18e-0755.1
NC_017262:1913302:1918336191833619195651230Zymomonas mobilis subsp. mobilis ATCC 10988 chromosome, completemajor facilitator superfamily protein1e-0654.7
NC_009800:1632585:1633850163385016350401191Escherichia coli HS, complete genomesugar efflux transporter B1e-0654.7
CP002516:2361628:2374949237494923761391191Escherichia coli KO11, complete genomemajor facilitator superfamily MFS_11e-0654.7
CP002185:1727493:1729716172971617309061191Escherichia coli W, complete genomepredicted arabinose transporter1e-0654.7
CU928160:1625535:1627758162775816289481191Escherichia coli IAI1 chromosome, complete genomewide-spectrum sugar (arabinose, isopropyl-beta-D-galactoside) exporter; MFS superfamily1e-0654.7
NC_011415:1715644:1717867171786717190571191Escherichia coli SE11 chromosome, complete genomesugar efflux transporter1e-0654.7
NC_011741:1625535:1627758162775816289481191Escherichia coli IAI1 chromosome, complete genomesugar efflux transporter1e-0654.7
NC_016902:2361628:2374949237494923761391191Escherichia coli KO11FL chromosome, complete genomemajor facilitator superfamily protein1e-0654.7
NC_010498:1615980:1630915163091516321051191Escherichia coli SMS-3-5, complete genomesugar efflux transporter SotB1e-0654.7
NC_020209:945000:9572169572169584031188Pseudomonas poae RE*1-1-14, complete genomemajor facilitator family transporter1e-0654.7
NC_015379:3570658:3593354359335435944961143Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative major facilitator transporter1e-0654.7
NC_019673:1656680:1668841166884116700131173Saccharothrix espanaensis DSM 44229 complete genomePermease, MFS-type2e-0654.3
NC_015567:69190:8857488574897371164Serratia sp. AS9 chromosome, complete genomemajor facilitator superfamily protein2e-0654.3
NC_015566:69190:8857488574897371164Serratia sp. AS12 chromosome, complete genomemajor facilitator superfamily protein2e-0654.3
NC_013406:3672857:3712636371263637138081173Paenibacillus sp. Y412MC10 chromosome, complete genomemajor facilitator superfamily protein2e-0654.3
NC_013282:2026083:2078119207811920792851167Cronobacter turicensis, complete genomeInner membrane transport protein ydhP2e-0653.9
NC_006569:370846:3889473889473901341188Silicibacter pomeroyi DSS-3 megaplasmid, complete sequencehypothetical protein2e-0653.9
NC_013171:1194500:1195951119595111971021152Anaerococcus prevotii DSM 20548, complete genomemajor facilitator superfamily MFS_12e-0653.9
NC_008699:3775561:3775561377556137767961236Nocardioides sp. JS614, complete genomemajor facilitator superfamily MFS_13e-0653.5
NC_008563:1651270:1654969165496916561591191Escherichia coli APEC O1, complete genomesugar efflux transporter4e-0653.1
NC_013446:3520500:3520619352061935217821164Comamonas testosteroni CNB-2, complete genomemajor facilitator superfamily MFS_13e-0653.1
NC_013854:1277106:1278217127821712794101194Azospirillum sp. B510, complete genomemajor facilitator transporter5e-0652.8
NC_017328:335160:3586753586753599521278Shigella flexneri 2002017 chromosome, complete genomeInvolved in either transport or processing of arabinose polymers5e-0652.8
NC_007005:4810295:4834440483444048356061167Pseudomonas syringae pv. syringae B728a, complete genomeGeneral substrate transporter:Major facilitator superfamily5e-0652.8
NC_016023:3391116:3398699339869933998831185Bacillus coagulans 36D1 chromosome, complete genomemajor facilitator superfamily protein8e-0652
NC_014315:2659479:2667318266731826684631146Nitrosococcus watsoni C-113 chromosome, complete genomemajor facilitator superfamily protein1e-0551.6