Pre_GI Gene

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Host: NC_009800 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009800:1632585 Escherichia coli HS, complete genome

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
163258516337001116hypothetical proteinBLASTP
163385016350401191sugar efflux transporter BQuickGO ontologyBLASTP
16350651635730666multiple antibiotic resistance protein MarCQuickGO ontologyBLASTP
16359411636375435multiple antibiotic resistance protein MarRQuickGO ontologyBLASTP
163708516385241440putative 6-phospho-beta-glucosidase BglAQuickGO ontologyBLASTP
16402771640588312PTS system lactosecellobiose-specific family IIA componentQuickGO ontologyBLASTP
164061616419291314PTS system lactosecellobiose family IIC componentQuickGO ontologyBLASTP
16420531642364312PTS system lactosecellobiose family IIB componentQuickGO ontologyBLASTP
16425631643282720transcriptional regulator GntR familyQuickGO ontologyBLASTP
16433051644204900transporter 10 TMS drugmetabolite exporter DME familyQuickGO ontologyBLASTP
164439916455861188major facilitator family transporterQuickGO ontologyBLASTP
1645713164580896hypothetical proteinBLASTP
16460271646917891diguanylate cyclase GGDEF domain proteinQuickGO ontologyBLASTP
16471721647564393conserved hypothetical protein TIGR00156QuickGO ontologyBLASTP
16478401648358519competencedamage-inducible protein CinA C-terminal domain proteinQuickGO ontologyBLASTP
164840316504482046peptidyl-dipeptidase DcpQuickGO ontologyBLASTP
16505851651331747NADP-dependent l-serinel-allo-threonine dehydrogenase ydfgQuickGO ontologyBLASTP