Pre_GI Gene

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Host: NC_008543 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008543:2474002 Burkholderia cenocepacia HI2424 chromosome 2, complete sequence

Host Lineage: Burkholderia cenocepacia; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This organism (HI2424; BCC1) was isolated as part of a study to find this organism in natural environments. Samples taken from fields that were planted with onions in New York in 1999 and 2000 were examined and it was discovered that isolates were the same as ones that can infect CF patients. This species (genomovar III) is part of the Burkholderia cepacia complex, which consists of 9 closely related species, also known as genomovars. These organisms are commonly found in soil and all are opportunistic pathogens espcially in cystic fibrosis patients.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
247400224750841083NADHflavin oxidoreductaseNADH oxidaseQuickGO ontologyBLASTP
24751412475758618short-chain dehydrogenasereductase SDRQuickGO ontologyBLASTP
24759882476908921transcriptional regulator LysR familyQuickGO ontologyBLASTP
247722024785301311cytochrome c class IQuickGO ontologyBLASTP
247856324808272265aldehyde oxidase and xanthine dehydrogenase ab hammerheadQuickGO ontologyBLASTP
248088524813524682Fe-2S-binding domain proteinQuickGO ontologyBLASTP
248164324828391197major facilitator superfamily MFS_1QuickGO ontologyBLASTP
24831082484001894transcriptional regulator LysR familyQuickGO ontologyBLASTP
24840782484983906transcriptional regulator LysR familyQuickGO ontologyBLASTP
24851312485460330hypothetical proteinBLASTP
24857852486393609short-chain dehydrogenasereductase SDRQuickGO ontologyBLASTP
24865012487394894transcriptional regulator LysR familyQuickGO ontologyBLASTP
24875102488442933amidohydrolase 2QuickGO ontologyBLASTP
248844524897671323major facilitator superfamily MFS_1QuickGO ontologyBLASTP
248977924910171239major facilitator superfamily MFS_1QuickGO ontologyBLASTP
249101424922941281major facilitator superfamily MFS_1QuickGO ontologyBLASTP
249229124933371047amidohydrolase 2QuickGO ontologyBLASTP
249334824944991152porin Gram-negative typeQuickGO ontologyBLASTP