Pre_GI Gene

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Host: NC_010322 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010322:3315024 Pseudomonas putida GB-1 chromosome, complete genome

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
331502433175672544PASPAC sensor-containing diguanylate cyclasephosphodiesteraseQuickGO ontologyBLASTP
33176973318047351hypothetical protein
33181383318518381hypothetical proteinBLASTP
33185613319085525hypothetical proteinBLASTP
331923233210191788thiamine pyrophosphate proteinQuickGO ontologyBLASTP
33211413321866726hypothetical proteinBLASTP
33230543323278225hypothetical protein
33233223323510189hypothetical protein
33240753324281207LysR family transcriptional regulatorQuickGO ontologyBLASTP
33242783325159882integrase catalytic subunitQuickGO ontologyBLASTP
33251503325428279transposase IS3IS911 family proteinQuickGO ontologyBLASTP
33255953325978384AraC family transcriptional regulatorQuickGO ontologyBLASTP
33260463326318273peptidaseQuickGO ontologyBLASTP
33267343326961228hypothetical proteinBLASTP
33271953327515321NUDIX hydrolaseQuickGO ontologyBLASTP
33276713328123453hypothetical proteinBLASTP
332835633297411386methyltransferase smallQuickGO ontologyBLASTP
332983533310431209major facilitator superfamily transporterQuickGO ontologyBLASTP
333109333321211029dienelactone hydrolaseQuickGO ontologyBLASTP
33323273333292966AraC family transcriptional regulatorQuickGO ontologyBLASTP
33333443333571228hypothetical proteinBLASTP
33338303334120291hypothetical proteinBLASTP
333525533364571203alcohol dehydrogenaseQuickGO ontologyBLASTP
33364713336704234hypothetical protein
333673833380631326short chain dehydrogenaseQuickGO ontologyBLASTP
33381433338685543PfpI family intracellular peptidaseQuickGO ontologyBLASTP
333875833399001143histidine kinaseQuickGO ontologyBLASTP
33400863340448363response regulator receiver proteinQuickGO ontologyBLASTP
33405203340786267hypothetical proteinBLASTP
33409963341412417response regulator receiver proteinQuickGO ontologyBLASTP
33415793342388810alphabeta hydrolase fold family proteinQuickGO ontologyBLASTP
334238533435661182PASPAC sensor signal transduction histidine kinaseQuickGO ontologyBLASTP