Pre_GI: BLASTP Hits

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Query: NC_004463:5722468:5725082 Bradyrhizobium japonicum USDA 110, complete genome

Start: 5725082, End: 5726518, Length: 1437

Host Lineage: Bradyrhizobium diazoefficiens; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain was isolated from Glycine hispida in 1959 in Florida, USA, and has been widely studied because of its superior symbiotic nitrogen fixation with soybeans as compared to other strains. This strain contains a 681 Kb symbiosis island that contains genes for nitrogen fixation and root nodule formation. The chromosome also contains genes resembling those of type III and IV secretion systems.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008609:1976403:2001971200197120032541284Pelobacter propionicus DSM 2379, complete genomephage integrase family protein6e-25115
NC_015733:1179977:1183392118339211846211230Pseudomonas putida S16 chromosome, complete genomeputative phage-related integrase protein2e-23110
NC_015186:1126830:1130897113089711321111215Acidiphilium multivorum AIU301, complete genomephage integrase family protein1e-21105
NC_011992:1318691:1325211132521113264671257Acidovorax ebreus TPSY, complete genomeintegrase family protein2e-21103
NC_007517:2564361:2583217258321725844611245Geobacter metallireducens GS-15, complete genomePhage integrase3e-21103
NC_007508:2783443:2802474280247428036761203Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomephage-related integrase3e-21103
NC_008463:1293079:1301126130112613023281203Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative integrase3e-21103
NC_011283:1307173:1309011130901113102611251Klebsiella pneumoniae 342 chromosome, complete genomephage integrase family site-specific recombinase9e-21102
NC_016602:2854107:2874022287402228752091188Vibrio furnissii NCTC 11218 chromosome 1, complete sequencephage integrase family protein9e-21102
NC_008344:669498:6859576859576871591203Nitrosomonas eutropha C91, complete genomephage integrase family protein5e-21102
NC_004741:2593012:2612492261249226136941203Shigella flexneri 2a str. 2457T, complete genomeputative integrase5e-21102
NC_008344:2374761:2378101237810123793031203Nitrosomonas eutropha C91, complete genomephage integrase family protein5e-21102
NC_011901:1860887:1864546186454618656311086Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completeintegrase family protein9e-21101
NC_012587:1203103:1216780121678012180691290Rhizobium sp. NGR234, complete genomeDNA integration/recombination/invertion protein1e-20101
NC_016745:2028424:2035828203582820370151188Oceanimonas sp. GK1 chromosome, complete genomephage integrase family protein3e-20100
NC_009800:2651730:2667104266710426682911188Escherichia coli HS, complete genomesite-specific recombinase, phage integrase family5e-2099.4
NC_002678:5714000:5714223571422357154851263Mesorhizobium loti MAFF303099, complete genomeCP4-like integrase1e-1998.2
NC_012779:3016327:3032118303211830333201203Edwardsiella ictaluri 93-146, complete genomeintegrase1e-1997.8
NC_008254:534590:5511175511175523731257Mesorhizobium sp. BNC1, complete genomephage integrase4e-1996.3
NC_013456:3011518:3030104303010430313001197Vibrio sp. Ex25 chromosome 1, complete genomeintegrase7e-1995.5
NC_002939:47406:7972579725810441320Geobacter sulfurreducens PCA, complete genomeintegrative genetic element Gsu32, integrase8e-1995.5
NC_012912:1295653:1301778130177813030341257Dickeya zeae Ech1591, complete genomeintegrase family protein1e-1895.1
NC_008740:443274:4525464525464537361191Marinobacter aquaeolei VT8, complete genomephage integrase family protein7e-1789
NC_014311:978761:9827109827109839571248Ralstonia solanacearum PSI07 chromosome, complete genomephage integrase3e-1687
NC_009485:5171658:5176346517634651776501305Bradyrhizobium sp. BTAi1 chromosome, complete genomephage-like integrase3e-1686.7
NC_015381:2859000:2913291291329129145471257Burkholderia gladioli BSR3 chromosome 1, complete sequencephage integrase7e-1582.4
NC_012918:928903:9578379578379591381302Geobacter sp. M21 chromosome, complete genomeintegrase family protein2e-1480.9
NC_012856:3615550:3641609364160936428411233Ralstonia pickettii 12D chromosome 1, complete genomeintegrase family protein4e-1479.7
NC_020908:2571943:2584876258487625860331158Octadecabacter arcticus 238, complete genomeputative phage integrase8e-1479
NC_015138:2069739:2076835207683520780911257Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeintegrase family protein2e-1377.8
NC_009720:464078:4856024856024869871386Xanthobacter autotrophicus Py2, complete genomeintegrase family protein3e-1377
NC_013508:876431:8847268847268859491224Edwardsiella tarda EIB202, complete genomeputative site specific integrase3e-1376.6
NC_013861:728648:7416787416787429101233Legionella longbeachae NSW150, complete genomephage-related integrase7e-1375.9
NC_014258:355845:3591013591013602401140Pantoea vagans C9-1 plasmid pPag3, complete sequenceprophage Cp4-57 integrase2e-1274.7
NC_002655:301940:3107563107563119881233Escherichia coli O157:H7 EDL933, complete genomeintegrase protein for prophage CP-933I2e-1274.3
NC_002695:301939:3108063108063119871182Escherichia coli O157:H7 str. Sakai, complete genomeputative integrase3e-1273.9
NC_014972:480355:4934964934964946591164Desulfobulbus propionicus DSM 2032 chromosome, complete genomeintegrase family protein3e-1273.6
NC_007493:1929000:1930262193026219315031242Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequencepossible phage-related integrase5e-1273.2
NC_013941:338121:3517443517443529761233Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeIntegrase for prophage CP-933I7e-1272.4
NC_007298:2689731:2722914272291427243591446Dechloromonas aromatica RCB, complete genomePhage integrase8e-1272.4
NC_003295:2669480:2694535269453526957881254Ralstonia solanacearum GMI1000, complete genomePUTATIVE INTEGRASE PROTEIN9e-1272
NC_009076:106807:1083791083791096081230Burkholderia pseudomallei 1106a chromosome I, complete sequencesite-specific recombinase, phage integrase family1e-1172
NC_012917:3198000:3204199320419932053891191Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeintegrase family protein2e-1170.9
NC_002939:2337402:2337618233761823389791362Geobacter sulfurreducens PCA, complete genomeintegrative genetic element Gsu56, integrase3e-1170.1
NC_002939:2315402:2337618233761823389791362Geobacter sulfurreducens PCA, complete genomeintegrative genetic element Gsu56, integrase3e-1170.1
NC_016026:2082500:2095118209511820962931176Micavibrio aeruginosavorus ARL-13 chromosome, complete genomephage integrase family protein6e-1169.3
NC_017249:3229500:324991232499123250130219Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein7e-1169.3
NC_015717:2479394:2483484248348424846561173Hyphomicrobium sp. MC1, complete genomeputative Integrase family protein7e-1168.9
NC_011601:2854178:2869825286982528710871263Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeintegrase1e-1068.2
NC_011353:305820:3146363146363158681233Escherichia coli O157:H7 str. EC4115 chromosome, complete genomesite-specific recombinase, phage integrase family2e-1067.8
NC_015062:99969:1189951189951201191125Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequenceintegrase family protein2e-1067.4
NC_010468:1343228:1356303135630313575081206Escherichia coli ATCC 8739, complete genomeintegrase family protein3e-1067
NC_014931:2929695:2933381293338129345921212Variovorax paradoxus EPS chromosome, complete genomeintegrase family protein3e-1067
NC_013456:212150:2178712178712190881218Vibrio sp. Ex25 chromosome 1, complete genomeintegrase3e-1066.6
NC_017160:4508000:4519840451984045210331194Yersinia pestis D182038 chromosome, complete genomeputative phage integrase4e-1066.6
NC_008150:4634695:4641845464184546430381194Yersinia pestis Antiqua, complete genomeputative phage integrase4e-1066.6
NC_011083:2542876:2550781255078125520101230Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,integrase5e-1066.2
NC_004578:1190000:1214486121448612156731188Pseudomonas syringae pv. tomato str. DC3000, complete genomesite-specific recombinase, phage integrase family6e-1065.9
NC_020211:996497:1003680100368010048461167Serratia marcescens WW4, complete genomeputative site specific integrase1e-0965.1
NC_008609:3921113:3938275393827539394831209Pelobacter propionicus DSM 2379, complete genomephage integrase family protein2e-0964.7
NC_014910:2015627:2022969202296920239911023Alicycliphilus denitrificans BC chromosome, complete genomeintegrase family protein2e-0964.7
NC_015224:4426167:4437677443767744388461170Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative phage integrase1e-0964.7
NC_015593:2103815:2117772211777221190491278Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completeintegrase family protein2e-0964.3
NC_003295:998000:1017298101729810184731176Ralstonia solanacearum GMI1000, complete genomePROBABLE CP4-LIKE INTEGRASE PROTEIN2e-0964.3
NC_012917:3684840:3695126369512636962891164Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeintegrase family protein2e-0963.9
NC_015554:1215401:1224805122480512260791275Alteromonas sp. SN2 chromosome, complete genomeintegrase family protein2e-0963.9
NC_015224:3291736:3302103330210333032661164Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,Integrase4e-0963.5
NC_009801:3374501:3397619339761933988031185Escherichia coli E24377A, complete genomesite-specific recombinase, phage integrase family protein3e-0963.5
NC_021172:3655206:3666909366690936681741266Hyphomicrobium denitrificans 1NES1, complete genomePhage integrase3e-0963.5
NC_008253:3941938:3948173394817339493541182Escherichia coli 536, complete genomeputative phage integrase4e-0963.2
NC_011891:1225000:1229179122917912305791401Anaeromyxobacter dehalogenans 2CP-1, complete genomeintegrase family protein4e-0963.2
NC_006569:69939:8572185721869231203Silicibacter pomeroyi DSS-3 megaplasmid, complete sequencesite-specific recombinase, phage integrase family4e-0963.2
CP002797:4775780:4790688479068847918661179Escherichia coli NA114, complete genomePutative integrase6e-0962.8
NC_008825:4025705:4038547403854740397581212Methylibium petroleiphilum PM1, complete genomephage-related integrase8e-0962.4
NC_008118:56777:6514665146662491104Yersinia pestis Nepal516 plasmid pMT, complete sequenceintegrase7e-0962.4
NC_003134:64672:8714787147883251179Yersinia pestis CO92 plasmid pMT1, complete sequence6e-0962.4
NC_004838:51013:8293182931841091179Yersinia pestis KIM plasmid pMT-1, complete sequence6e-0962.4
NC_005815:61148:7147671476726541179Yersinia pestis biovar Microtus str. 91001 plasmid pMT1, completeputative integrase6e-0962.4
NC_010465:3431500:3443988344398834451961209Yersinia pseudotuberculosis YPIII, complete genomeintegrase family protein8e-0962
NC_015186:491930:5133815133815146521272Acidiphilium multivorum AIU301, complete genomephage integrase family protein1e-0861.6
NC_014972:1126426:1145414114541411465951182Desulfobulbus propionicus DSM 2032 chromosome, complete genomeintegrase family protein1e-0861.6
NC_008752:725189:7308507308507320551206Acidovorax avenae subsp. citrulli AAC00-1, complete genomephage integrase family protein1e-0861.6
NC_009378:62215:7058470584716871104Yersinia pestis Pestoides F plasmid MT, complete sequenceintegrase2e-0861.2
NC_011666:2259447:2266688226668822678901203Methylocella silvestris BL2, complete genomeintegrase family protein3e-0860.5
NC_014500:3744705:3763439376343937646531215Dickeya dadantii 3937 chromosome, complete genomeIntegrase3e-0860.5
NC_012918:928903:9674749674749687571284Geobacter sp. M21 chromosome, complete genomeintegrase family protein3e-0860.5
NC_007404:2743877:2750091275009127514221332Thiobacillus denitrificans ATCC 25259, complete genomehypothetical protein4e-0860.1
NC_016513:1400899:141742814174281418261834Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completephage integrase family site-specific recombinase4e-0860.1
NC_011958:976500:9867399867399880431305Rhodobacter sphaeroides KD131 chromosome 2, complete genomePhage integrase4e-0860.1
NC_010465:62348:6970669706708961191Yersinia pseudotuberculosis YPIII, complete genomeintegrase family protein5e-0859.7
NC_004431:4270305:4274702427470242758861185Escherichia coli CFT073, complete genomePutative prophage integrase5e-0859.7
NC_012967:3769499:3775658377565837768421185Escherichia coli B str. REL606 chromosome, complete genomeInt5e-0859.7
NC_013361:4959323:4965243496524349664121170Escherichia coli O26:H11 str. 11368 chromosome, complete genomeintegrase4e-0859.7
NC_014414:1140357:1144723114472311460451323Parvularcula bermudensis HTCC2503 chromosome, complete genomePhage integrase6e-0859.3
NC_011883:1422650:1441887144188714430951209Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,integrase family protein6e-0859.3
NC_016514:891772:8998788998789011371260Enterobacter cloacae EcWSU1 chromosome, complete genomeprophage CPS-53 integrase6e-0859.3
NC_004337:3590323:3806770380677038079811212Shigella flexneri 2a str. 301, complete genomeputative integrase5e-0859.3
NC_008577:4533574:4539288453928845405021215Shewanella sp. ANA-3 chromosome 1, complete sequencephage integrase family protein7e-0858.9
NC_020260:3931567:394022939402293940780552Cronobacter sakazakii Sp291, complete genomeputative prophage P4 integrase Int(P4)7e-0858.9
NC_010551:2007926:201694420169442017801858Burkholderia ambifaria MC40-6 chromosome 1, complete sequenceintegrase family protein1e-0758.5
NC_008782:3110744:3127686312768631290201335Acidovorax sp. JS42, complete genomephage integrase family protein1e-0758.5
NC_015663:4522109:4545796454579645469831188Enterobacter aerogenes KCTC 2190 chromosome, complete genomesite-specific recombinase, phage integrase family protein1e-0758.5
NC_013941:4470932:4470932447093244721851254Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeCP4-like integrase1e-0758.5
NC_011745:3245000:3263297326329732645501254Escherichia coli ED1a chromosome, complete genomeIntegrase from prophage9e-0858.5
NC_016609:7608723:7611255761125576124661212Niastella koreensis GR20-10 chromosome, complete genomeintegrase family protein9e-0858.5
NC_010498:301000:3068793068793080631185Escherichia coli SMS-3-5, complete genomephage integrase family site specific recombinase1e-0758.2
NC_013421:1505176:1519062151906215202761215Pectobacterium wasabiae WPP163, complete genomeintegrase family protein1e-0758.2
NC_012917:3241196:3247888324788832491021215Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeintegrase family protein1e-0758.2
NC_013961:73037:9431494314955371224Erwinia amylovora, complete genomeIntegrase2e-0757.8
NC_013971:73037:9431494314955371224Erwinia amylovora ATCC 49946 chromosome, complete genomeintegrase2e-0757.8
NC_015740:2407500:2415772241577224171721401Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completephage integrase family protein2e-0757.8
NC_009832:110239:1164641164641176331170Serratia proteamaculans 568, complete genomeintegrase family protein2e-0757.4
NC_013008:306953:316491316491317177687Escherichia coli O157:H7 str. TW14359 chromosome, complete genome3e-0757
NC_014306:4901390:4945226494522649464011176Erwinia billingiae Eb661, complete genomePhage integrase3e-0757
NC_008322:373531:3894733894733907561284Shewanella sp. MR-7, complete genomephage integrase family protein4e-0756.6
NC_008700:367949:3848133848133863601548Shewanella amazonensis SB2B, complete genomehypothetical protein5e-0756.2
NC_016947:666627:6723846723846734751092Mycobacterium intracellulare MOTT-02 chromosome, complete genomeprophage integrase5e-0756.2
NC_016002:2037374:2066998206699820681851188Pseudogulbenkiania sp. NH8B, complete genomephage integrase family protein7e-0755.8
NC_010498:4072681:4081597408159740827601164Escherichia coli SMS-3-5, complete genomephage integrase family site specific recombinase7e-0755.8
NC_017506:1100679:1109355110935511107041350Marinobacter adhaerens HP15 chromosome, complete genomephage integrase family protein8e-0755.5
NC_009800:320115:3338373338373350451209Escherichia coli HS, complete genomesite-specific recombinase, phage integrase family protein1e-0655.1
NC_011283:3177350:3196214319621431974311218Klebsiella pneumoniae 342 chromosome, complete genomephage integrase family site-specific recombinase1e-0654.7
NC_009656:5475540:5482565548256554837521188Pseudomonas aeruginosa PA7 chromosome, complete genomeintegrase2e-0654.7
NC_020911:1776670:1793824179382417951251302Octadecabacter antarcticus 307, complete genomeputative phage integrase2e-0654.7
NC_008343:2020785:2024557202455720256991143Granulibacter bethesdensis CGDNIH1, complete genomeDNA integration/recombination/inversion protein3e-0653.9
NC_014837:1144500:1148136114813611493291194Pantoea sp. At-9b chromosome, complete genomeintegrase family protein4e-0653.5
NC_008789:350650:3635873635873647261140Halorhodospira halophila SL1, complete genomephage integrase family protein4e-0653.1
NC_003295:2787371:2824600282460028258021203Ralstonia solanacearum GMI1000, complete genomePROBABLE INTEGRASE PROTEIN4e-0653.1
NC_020063:2565605:2594120259412025953011182Enterobacteriaceae bacterium strain FGI 57, complete genomeIntegrase5e-0652.8
NC_010468:49074:5411954119552941176Escherichia coli ATCC 8739, complete genomeintegrase family protein7e-0652.4
NC_013851:2729000:2730696273069627319731278Allochromatium vinosum DSM 180 chromosome, complete genomeintegrase family protein8e-0652.4
NC_010793:1811401:1846220184622018473381119Orientia tsutsugamushi str. Ikeda, complete genomeputative integrase8e-0652.4
NC_009667:1934818:1940218194021819414981281Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequencephage integrase family protein8e-0652.4