Pre_GI Gene

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Host: NC_009800 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009800:2651730 Escherichia coli HS, complete genome

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
26517302652245516surface antigen family proteinQuickGO ontologyBLASTP
26522612652800540hypothetical proteinBLASTP
265301526571124098putative addiction moduleQuickGO ontologyBLASTP
265727526582821008hypothetical proteinBLASTP
265894526603361392P-type conjugative transfer protein TrbLQuickGO ontologyBLASTP
26605242661318795P-type conjugative transfer protein TrbJQuickGO ontologyBLASTP
26614002662044645hypothetical proteinBLASTP
26627572663032276IS1 transposase orfAQuickGO ontologyBLASTP
26629512663454504IS1 transposase orfBQuickGO ontologyBLASTP
26634652664313849plasmid encoded RepA proteinQuickGO ontologyBLASTP
26643832664613231transcriptional regulator AlpA familyQuickGO ontologyBLASTP
266482026661601341hypothetical proteinBLASTP
26662532666528276IS1 transposase orfAQuickGO ontologyBLASTP
26664472666950504IS1 transposase orfBQuickGO ontologyBLASTP
266710426682911188site-specific recombinase phage integrase familyQuickGO ontologyBLASTP
26683542668518165hypothetical protein
266859826701751578GMP synthase glutamine-hydrolyzingQuickGO ontologyBLASTP
267024426717101467inosine-5-monophosphate dehydrogenaseQuickGO ontologyBLASTP
267187226732421371exodeoxyribonuclease VII large subunitQuickGO ontologyBLASTP
26732392673454216hypothetical proteinBLASTP
267352326749951473GTP-binding protein EngAQuickGO ontologyBLASTP
267511326762911179outer membrane assembly lipoprotein YfgLQuickGO ontologyBLASTP