Pre_GI: BLASTP Hits

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Query: NC_003305:1035342:1040499 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 1040499, End: 1041245, Length: 747

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003063:1019674:103351110335111034278768Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein1e-143508
NC_008254:3246306:324909532490953249820726Mesorhizobium sp. BNC1, complete genometranscriptional regulator, histidine utilization repressor, GntR family3e-84311
NC_010694:2492378:250906425090642509819756Erwinia tasmaniensis, complete genomeGntR-family transcriptional regulatory protein5e-33141
NC_013939:913890:932884932884933630747Deferribacter desulfuricans SSM1, complete genomehistidine utilization repressor2e-32139
NC_009255:916000:921112921112921807696Burkholderia vietnamiensis G4 chromosome 2, complete sequencehistidine utilization repressor1e-29130
NC_014532:1713987:172126917212691721979711Halomonas elongata DSM 2581, complete genomehistidine utilization repressor7e-28124
NC_004347:103967:103967103967104674708Shewanella oneidensis MR-1, complete genomehistidine utilization repressor2e-27122
NC_007643:1504758:152827515282751529009735Rhodospirillum rubrum ATCC 11170, complete genomeTranscriptional Regulator, Histidine utilization repressor, GntR family5e-27121
NC_006677:1255079:126827412682741269014741Gluconobacter oxydans 621H, complete genomeHistidine utilization repressor9e-27120
NC_003037:1245645:124711312471131248060948Sinorhizobium meliloti 1021 plasmid pSymA, complete sequencePutative histidine utilization repressor protein9e-26117
NC_016887:221788:238809238809239579771Nocardia cyriacigeorgica GUH-2, complete genometranscriptional regulator5e-25114
NC_008095:7614000:761995076199507620693744Myxococcus xanthus DK 1622, complete genometranscriptional regulator, GntR family3e-1375.9
NC_007644:1352794:135596513559651356696732Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, GntR family1e-1273.9
NC_008525:1493317:149648314964831497184702Pediococcus pentosaceus ATCC 25745, complete genomeTranscriptional regulator2e-1273.2
NC_015376:2061990:208370120837012084468768Burkholderia gladioli BSR3 chromosome chromosome 2, completeTranscriptional regulator1e-1273.2
NC_007929:1290568:129384012938401294538699Lactobacillus salivarius subsp. salivarius UCC118, complete genomeTranscriptional regulator, GntR family6e-1271.2
NC_004193:375416:640434640434641180747Oceanobacillus iheyensis HTE831, complete genometranscriptional regulator5e-1168.2
NC_012470:1061392:106354310635431064241699Streptococcus equi subsp. zooepidemicus, complete genomeGntR family regulatory protein9e-1167.4
NC_007509:832473:835233835233836093861Burkholderia sp. 383 chromosome 3, complete sequencetranscriptional regulator, GntR family1e-1067
NC_018515:3169973:318893631889363189691756Desulfosporosinus meridiei DSM 13257 chromosome, complete genometranscriptional regulator1e-1067
NC_015975:380500:405127405127405825699Lactobacillus ruminis ATCC 27782 chromosome, complete genomeGntR family transcriptional regulator2e-1066.2
NC_008390:2156188:215618821561882156958771Burkholderia cepacia AMMD chromosome 1, complete sequencetranscriptional regulator, GntR family2e-1066.2
NC_014363:1605349:161115216111521611877726Olsenella uli DSM 7084 chromosome, complete genometranscriptional regulator, GntR family3e-1065.9
NC_015424:2510764:252788125278812528600720Aeromonas veronii B565 chromosome, complete genometranscriptional regulator of succinyl-CoA synthetase operon3e-1065.5
NC_003888:3602753:361362836136283614359732Streptomyces coelicolor A3(2), complete genomegntR-family regulator2e-0963.2
NC_008497:556365:574068574068574769702Lactobacillus brevis ATCC 367, complete genomeTranscriptional regulator2e-0962.8
NC_015978:412856:431333431333432055723Lactobacillus sanfranciscensis TMW 1.1304 chromosome, completehypothetical protein5e-0961.6
NC_021175:881845:909969909969910667699Streptococcus oligofermentans AS 1.3089, complete genomeGntR family transcriptional regulator7e-0961.2
NC_018515:3600869:362844736284473629145699Desulfosporosinus meridiei DSM 13257 chromosome, complete genometranscriptional regulator6e-0961.2
NC_014210:723719:733347733347734111765Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, GntR family8e-0960.8
NC_012721:979656:100139510013951002225831Burkholderia glumae BGR1 chromosome 2, complete genomeTranscriptional regulator, GntR family protein1e-0860.5
NC_007492:3180480:322535632253563226087732Pseudomonas fluorescens PfO-1, complete genomeTranscriptional Regulator, GntR family1e-0860.5
NC_010999:623489:623489623489624226738Lactobacillus casei, complete genomeTranscriptional regulator1e-0860.5
NC_011886:1035500:104943710494371050177741Arthrobacter chlorophenolicus A6, complete genometranscriptional regulator, GntR family1e-0860.5
NC_007947:2447635:245227024522702453046777Methylobacillus flagellatus KT, complete genometranscriptional regulator, GntR family2e-0859.7
NC_015957:7533000:754612175461217546888768Streptomyces violaceusniger Tu 4113 chromosome, complete genomeGntR family transcriptional regulator with UTRA sensor domain2e-0859.3
NC_015563:4773415:478062647806264781414789Delftia sp. Cs1-4 chromosome, complete genomeGntR family transcriptional regulator with UTRA sensor domain4e-0858.5
NC_014376:4369666:437329843732984374047750Clostridium saccharolyticum WM1 chromosome, complete genometranscriptional regulator, GntR family4e-0858.5
NC_015389:114469:134028134028134759732Coriobacterium glomerans PW2 chromosome, complete genometranscriptional regulator, GntR family6e-0858.2
NC_014910:2015627:202915620291562029947792Alicycliphilus denitrificans BC chromosome, complete genomeubic transcription regulator-associated domain-containing protein1e-0757.4
NC_010002:1584500:160910616091061609852747Delftia acidovorans SPH-1, complete genometranscriptional regulator, GntR family9e-0857.4
NC_015555:1989463:200663720066372007359723Thermoanaerobacterium xylanolyticum LX-11 chromosome, completetranscriptional regulator, GntR family with UTRA sensor domain9e-0857.4
NC_016114:3575955:358827135882713589014744Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeGntR family transcriptional regulator1e-0757
NC_019970:2263427:227858222785822279304723Thermoanaerobacterium thermosaccharolyticum M0795, complete genometranscriptional regulator2e-0756.6
NC_009328:3322802:333800633380063338722717Geobacillus thermodenitrificans NG80-2 chromosome, complete genometranscriptional regulator2e-0756.2
NC_018750:2270314:227346522734652274223759Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein3e-0755.8
NC_011894:3797500:380047338004733801228756Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, GntR family3e-0755.8
NC_016109:5455060:545729554572955458083789Kitasatospora setae KM-6054, complete genomeGntR family transcriptional regulator3e-0755.8
NC_010511:871905:884201884201884926726Methylobacterium sp. 4-46 chromosome, complete genomeGntR family transcriptional regulator2e-0755.8
NC_020210:3341976:335719633571963357912717Geobacillus sp. GHH01, complete genomeputative transcriptional regulator2e-0755.8
NC_008563:1651270:166368316636831664381699Escherichia coli APEC O1, complete genomeputative transcriptional regulator4e-0755.5
CP002185:1727493:173843117384311739129699Escherichia coli W, complete genomeputative transcriptional regulator4e-0755.5
CP002516:2361628:236672623667262367424699Escherichia coli KO11, complete genometranscriptional regulator, GntR family4e-0755.5
CU928160:1625535:163647316364731637171699Escherichia coli IAI1 chromosome, complete genomeputative DNA-binding transcriptional regulator HTH family4e-0755.5
NC_011415:1715644:172658217265821727280699Escherichia coli SE11 chromosome, complete genomeputative transcriptional regulator4e-0755.5
NC_011741:1625535:163647316364731637171699Escherichia coli IAI1 chromosome, complete genomeputative DNA-binding transcriptional regulator HTH family4e-0755.5
NC_016902:2361628:236672623667262367424699Escherichia coli KO11FL chromosome, complete genomeGntR family transcriptional regulator4e-0755.5
NC_008149:2517538:252317325231732523970798Yersinia pestis Nepal516, complete genomeGntR-family putative transcriptional regulatory protein3e-0755.5
NC_017265:2306500:230819223081922308989798Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,GntR family transcriptional regulator3e-0755.5
NC_014829:3964616:398018939801893980911723Bacillus cellulosilyticus DSM 2522 chromosome, complete genometranscriptional regulator, GntR family3e-0755.5
NC_007912:1231436:123868412386841239451768Saccharophagus degradans 2-40, complete genome1,4-alpha-glucan branching enzyme4e-0755.1
NC_011740:3739395:374508437450843745848765Escherichia fergusonii ATCC 35469, complete genomeputative GntR-family transcriptional regulator4e-0755.1
NC_021177:4124839:413046841304684131211744Streptomyces fulvissimus DSM 40593, complete genomeTranscriptional regulator, GntR family with UTRA sensor domain7e-0754.7
NC_013093:1213908:123094312309431231323381Actinosynnema mirum DSM 43827, complete genometranscriptional regulator, GntR family5e-0754.7
NC_011274:1544653:157101315710131571732720Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91GntR family regulatory protein5e-0754.7
NC_010125:1011430:101791310179131018671759Gluconacetobacter diazotrophicus PAl 5, complete genomeputative transcriptional regulator protein, GntR family5e-0754.7
NC_010498:1615980:162269216226921623390699Escherichia coli SMS-3-5, complete genomeGntR family transcriptional regulator8e-0754.3
NC_008278:5053899:507023350702335070985753Frankia alni ACN14a, complete genomePutative transcriptional regulator (GntR-family)8e-0754.3
NC_011365:1865687:188920618892061889964759Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeGntR family transcriptional regulator8e-0754.3
NC_016612:178864:186603186603187319717Klebsiella oxytoca KCTC 1686 chromosome, complete genomeGntR family transcriptional regulator1e-0653.9
NC_012559:2309566:231322923132292313960732Laribacter hongkongensis HLHK9, complete genomeprobable transcriptional regulator, GntR family1e-0653.9
NC_016113:803268:812013812013812744732Streptomyces cattleya NRRL 8057 plasmid pSCAT, complete sequenceProtein korA9e-0753.9
NC_006087:2470708:248524824852482486006759Leifsonia xyli subsp. xyli str. CTCB07, complete genometranscriptional regulator, GntR family1e-0653.5
NC_008262:2649289:265001426500142650736723Clostridium perfringens SM101, complete genometranscriptional regulator, GntR family2e-0653.1
NC_009800:1632585:164256316425631643282720Escherichia coli HS, complete genometranscriptional regulator, GntR family2e-0653.1
NC_006905:3913988:392410639241063924849744Salmonella enterica subsp. enterica serovar Choleraesuis strputative regulatory protein, gntR family2e-0653.1
NC_006905:3717306:373309237330923733811720Salmonella enterica subsp. enterica serovar Choleraesuis strputative regulatory protein, gntR family2e-0652.8
NC_016582:5393568:540514154051415405914774Streptomyces bingchenggensis BCW-1 chromosome, complete genomeGntR family transcriptional regulator2e-0652.8
NC_004631:3841975:384910438491043849847744Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative GntR-family transcriptional regulator3e-0652.4
NC_011083:3985618:399864839986483999391744Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative GntR-family transcriptional regulator3e-0652.4
NC_011149:3895921:390895139089513909694744Salmonella enterica subsp. enterica serovar Agona str. SL483,putative GntR-family transcriptional regulator3e-0652.4
NC_011080:3941909:395502339550233955766744Salmonella enterica subsp. enterica serovar Newport str. SL254,putative GntR-family transcriptional regulator3e-0652.4
NC_006511:3759550:377257137725713773314744Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative GntR-family transcriptional regulator3e-0652.4
NC_010102:3919999:393253339325333933276744Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-0652.4
NC_003197:3971905:398443939844393985182744Salmonella typhimurium LT2, complete genomeputative regulatory protein3e-0652.4
NC_015594:332432:349319349319350053735Sphingobium chlorophenolicum L-1 chromosome chromosome 2, completeGntR domain-containing protein3e-0652.4
NC_003198:3855157:386361438636143864357744Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative GntR-family transcriptional regulator3e-0652.4
NC_011094:3853036:386615138661513866894744Salmonella enterica subsp. enterica serovar Schwarzengrund strGntR family transcriptional regulator3e-0652.4
NC_015957:1070500:107590210759021076678777Streptomyces violaceusniger Tu 4113 chromosome, complete genomeGntR family transcriptional regulator3e-0652.4
NC_003888:4377000:438548643854864386217732Streptomyces coelicolor A3(2), complete genomeGntR-family transcriptional regulator3e-0652.4
NC_017046:3991551:400458040045804005323744Salmonella enterica subsp. enterica serovar Typhimurium str. 798GntR family transcriptional regulator3e-0652.4
NC_016863:3933848:394573839457383946481744Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative regulatory protein3e-0652.4
NC_016857:3993864:400575340057534006496744Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74GntR family transcriptional regulator3e-0652.4
NC_016856:3985597:399813139981313998874744Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative regulatory protein3e-0652.4
NC_016810:3993863:400575240057524006495744Salmonella enterica subsp. enterica serovar Typhimurium strGntR family transcriptional regulator3e-0652.4
NC_011147:3755725:376825037682503768993744Salmonella enterica subsp. enterica serovar Paratyphi A strGntR family transcriptional regulator3e-0652.4
NC_011830:2811441:282752028275202828290771Desulfitobacterium hafniense DCB-2, complete genometranscriptional regulator, GntR family4e-0652
NC_007907:1732500:174509917450991745869771Desulfitobacterium hafniense Y51, complete genomehypothetical protein4e-0652
NC_009328:1903291:1904069190406919051631095Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeprotein AraR5e-0651.6
NC_006510:1921541:1944770194477019458641095Geobacillus kaustophilus HTA426, complete genomearabinose metabolism transcriptional repressor5e-0651.6
NC_016593:2015321:2015321201532120164151095Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completearabinose metabolism transcriptional repressor5e-0651.6
NC_014363:114239:119881119881120606726Olsenella uli DSM 7084 chromosome, complete genometranscriptional regulator, GntR family5e-0651.6
NC_013411:2767400:2789798278979827908921095Geobacillus sp. Y412MC61, complete genometranscriptional regulator, GntR family with LacI sensor5e-0651.6
NC_014915:1909275:1929734192973419308281095Geobacillus sp. Y412MC52 chromosome, complete genometranscriptional regulator, GntR family with LacI sensor5e-0651.6
NC_016582:9664000:967760596776059678303699Streptomyces bingchenggensis BCW-1 chromosome, complete genomeGntR family transcriptional regulator5e-0651.6
NC_020210:1951746:1968428196842819695221095Geobacillus sp. GHH01, complete genomearabinose metabolism transcriptional repressor5e-0651.6
NC_016582:9551123:956203095620309562755726Streptomyces bingchenggensis BCW-1 chromosome, complete genomeGntR family transcriptional regulator5e-0651.6
NC_004369:2465461:246886924688692469660792Corynebacterium efficiens YS-314, complete genomeputative transcription regulator4e-0651.6
NC_010572:3925803:393580339358033936576774Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative GntR-family transcriptional regulator6e-0651.2
NC_013595:9149273:917088891708889171607720Streptosporangium roseum DSM 43021, complete genomeputative transcriptional regulator, GntR family8e-0650.8