Pre_GI Gene

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Host: NC_003063 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003063:1019674 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
10196741020588915hypothetical proteinBLASTP
102059110220691479hypothetical proteinBLASTP
10220661023052987hypothetical proteinBLASTP
102302110242141194hypothetical proteinBLASTP
102445410257761323hypothetical proteinBLASTP
10260841026491408hypothetical proteinBLASTP
10272001027457258hypothetical proteinBLASTP
10299211030454534hypothetical proteinBLASTP
10304511030993543hypothetical proteinBLASTP
1030929103100476tRNA-AlaQuickGO ontologyBLASTP
10335111034278768hypothetical proteinBLASTP
103428010356621383atrazine chlorohydrolaseQuickGO ontologyBLASTP
103586910369991131imidazolonepropionaseQuickGO ontologyBLASTP
103699610385401545histidine ammonia-lyaseQuickGO ontologyBLASTP
10384791039414936hypothetical proteinBLASTP
103941110411021692urocanate hydrataseQuickGO ontologyBLASTP
104128610423081023hypothetical proteinBLASTP
10423471042919573hypothetical proteinBLASTP
104293210444611530hypothetical proteinBLASTP