Pre_GI Gene

Some Help

Host: NC_015975 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_015975:380500 Lactobacillus ruminis ATCC 27782 chromosome, complete genome

Host Lineage: Lactobacillus ruminis; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This organism was isolated from bovine rumen. They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
38052938062799hypothetical protein
382611383498888heat shock proteinQuickGO ontologyBLASTP
383511384500990tRNA-dihydrouridine synthaseQuickGO ontologyBLASTP
3845693860591491Lysyl-tRNA synthetaseQuickGO ontologyBLASTP
386056386175120hypothetical proteinBLASTP
386451386717267hypothetical protein
386707386934228hypothetical protein
3874953888381344hypothetical protein
388964389419456hypothetical protein
389755390033279hypothetical protein
391051391968918SEFIR domain containing proteinQuickGO ontologyBLASTP
392215392343129hypothetical protein
392360392482123hypothetical protein
3987023988181175S ribosomal RNAQuickGO ontologyBLASTP
39882739889973tRNA-AsnQuickGO ontology
39892739899872tRNA-GluQuickGO ontologyBLASTP
39900339907573tRNA-ThrQuickGO ontology
3995874006091023asparaginaseQuickGO ontologyBLASTP
400614400718105hypothetical protein
4010554025241470Di-tripeptide transporterQuickGO ontologyBLASTP
403091403888798pyrroline-5-carboxylate reductaseQuickGO ontologyBLASTP
4039654051011137N-acetylglucosamine-6-phosphate deacetylaseQuickGO ontologyBLASTP
405127405825699GntR family transcriptional regulatorQuickGO ontologyBLASTP