Pre_GI: BLASTP Hits

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Query: NC_001263:1378605:1396230 Deinococcus radiodurans R1 chromosome 1, complete sequence

Start: 1396230, End: 1396544, Length: 315

Host Lineage: Deinococcus radiodurans; Deinococcus; Deinococcaceae; Deinococcales; Deinococcus-Thermus; Bacteria

General Information: This red-pigmented organism's name means "strange berry that withstands radiation", marking the fact that this organism is one of the most radiation-resistant known. It can tolerate radiation levels at 1000 times the levels that would kill a human and it was originally isolated in 1956 from a can of meat that had been irradiated with X-rays. The resistance to radiation may reflect its resistance to dessication, which also causes DNA damage. This organism may be of use in cleaning up toxic metals found at nuclear weapons production sites due to the radiation resistance. This bacterium is also a highly efficient transformer, and can readily take up exogenous DNA from the environment, which may also aid DNA repair. This organism carries multiple copies of many DNA repair genes, suggesting a robust system for dealing with DNA damage. The recombination system may rely on multiple copies of various repeat elements found throughout the genome.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015519:2739347:285428543075222Tepidanaerobacter sp. Re1 chromosome, complete genomeRNA-binding S4 domain-containing protein2e-1167.8
NC_016816:3373950:338661733866173386829213Pantoea ananatis LMG 5342, complete genomehypothetical protein6e-1166.2
NC_013956:1207500:121003312100331210245213Pantoea ananatis LMG 20103 chromosome, complete genomeYbcJ6e-1166.2
NC_021182:1:317031703376207Clostridium pasteurianum BC1, complete genomehypothetical protein3e-1063.9
NC_014393:1:299529953252258Clostridium cellulovorans 743B chromosome, complete genomeS4 domain-containing protein YaaA3e-1063.5
NC_014837:1144500:114606611460661146278213Pantoea sp. At-9b chromosome, complete genomehypothetical protein6e-1062.8
NC_014562:469154:473130473130473342213Pantoea vagans C9-1 chromosome, complete genomeUncharacterized protein ybcJ7e-1062.4
NC_010520:1:273727372943207Clostridium botulinum A3 str. Loch Maree, complete genomeS4 domain protein1e-0962
NC_012658:1:289628963102207Clostridium botulinum Ba4 str. 657 chromosome, complete genomeS4 domain-containing protein1e-0962
NC_009089:1:280528053011207Clostridium difficile 630, complete genomeputative RNA-binding mediating protein1e-0961.6
NC_014654:1:288928893107219Halanaerobium sp. 'sapolanicus' chromosome, complete genomeRNA-binding S4 domain protein2e-0961.6
NC_015425:2752482:276998027699802770186207Clostridium botulinum BKT015925 chromosome, complete genomeS4 domain-containing protein2e-0961.2
NC_008593:2527064:254454325445432544749207Clostridium novyi NT, complete genomeS4 domain protein6e-0959.7
NC_010516:1:276027602966207Clostridium botulinum B1 str. Okra, complete genomeS4 domain protein6e-0959.3
NC_012563:1:287928793085207Clostridium botulinum A2 str. Kyoto, complete genomeS4 domain protein6e-0959.3
NC_009495:1:273227322938207Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeS4 domain-containing protein6e-0959.3
NC_009697:1:273227322938207Clostridium botulinum A str. ATCC 19397 chromosome, completeS4 domain-containing protein6e-0959.3
NC_009698:1:273227322938207Clostridium botulinum A str. Hall chromosome, complete genomeS4 domain-containing protein6e-0959.3
NC_009699:1:272327232929207Clostridium botulinum F str. Langeland chromosome, complete genomeS4 domain-containing protein6e-0959.3
NC_017297:1:272327232929207Clostridium botulinum F str. 230613 chromosome, complete genomeS4 domain-containing protein6e-0959.3
NC_014152:1:277527752999225Thermincola sp. JR, complete genomeRNA-binding S4 domain protein1e-0858.5
NC_012704:57437:755677556775908342Corynebacterium kroppenstedtii DSM 44385, complete genomehypothetical protein2e-0857.8
NC_011415:600375:600161600161600394234Escherichia coli SE11 chromosome, complete genomehypothetical protein4e-0857
NC_012947:3231893:325642432564243256636213Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein4e-0857
NC_010814:155834:164012164012164230219Geobacter lovleyi SZ, complete genomeS4 domain protein YaaA3e-0857
NC_008319:1081614:108923710892371089461225Synechococcus sp. CC9311, complete genomeS4 domain protein5e-0856.6
NC_011297:1357947:137723113772311377446216Dictyoglomus thermophilum H-6-12, complete genomehypothetical protein6e-0856.2
NC_011837:1:274627462952207Clostridium kluyveri NBRC 12016, complete genomehypothetical protein6e-0856.2
NC_009706:1:274627462952207Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein6e-0856.2
NC_017317:134671:143442143442143732291Corynebacterium ulcerans 809 chromosome, complete genomehypothetical protein9e-0855.8
NC_013016:354000:377039377039377272234Neisseria meningitidis alpha14 chromosome, complete genomeputative RNA-binding protein1e-0755.1
NC_015687:1:319531953401207Clostridium acetobutylicum DSM 1731 chromosome, complete genomehypothetical protein2e-0754.7
NC_003030:1:319531953401207Clostridium acetobutylicum ATCC 824, complete genomeSmall conserved protein, ortholog of YAAA B.subtilis2e-0754.7
NC_015761:520858:523746523746523958213Salmonella bongori NCTC 12419, complete genomehypothetical protein2e-0754.7
NC_013192:2434664:273227322959228Leptotrichia buccalis DSM 1135, complete genomeS4 domain protein YaaA3e-0753.9
NC_010674:1:294529453151207Clostridium botulinum B str. Eklund 17B, complete genomeS4 domain protein YaaA4e-0753.5
NC_010723:1:289728973103207Clostridium botulinum E3 str. Alaska E43, complete genomeS4 domain protein YaaA4e-0753.5
NC_009092:2902171:290468629046862904916231Shewanella loihica PV-4, complete genomeRNA-binding S4 domain protein4e-0753.5
NC_003366:1:330433043510207Clostridium perfringens str. 13, complete genomehypothetical protein4e-0753.1
NC_008261:1:330533053511207Clostridium perfringens ATCC 13124, complete genomeS4 domain protein4e-0753.1
NC_008262:1:312931293335207Clostridium perfringens SM101, complete genomeS4 domain protein4e-0753.1
NC_009832:1280938:128461312846131284825213Serratia proteamaculans 568, complete genomehypothetical protein7e-0752.8
NC_011567:1:313631363348213Anoxybacillus flavithermus WK1, complete genomeS4-like RNA binding protein7e-0752.8
NC_014306:1286248:129094012909401291152213Erwinia billingiae Eb661, complete genomeconserved uncharacterized protein6e-0752.8
NC_014378:525717:307530753284210Acetohalobium arabaticum DSM 5501 chromosome, complete genomeRNA-binding S4 domain protein9e-0752.4
NC_020291:1:285528553061207Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeRNA-binding S4 domain-containing protein2e-0651.2
NC_014328:1:284128413047207Clostridium ljungdahlii ATCC 49587 chromosome, complete genomehypothetical protein2e-0651.2
NC_012214:2805297:282317328231732823385213Erwinia pyrifoliae Ep1/96, complete genomehypothetical protein3e-0650.4
NC_016845:1285435:128686312868631287075213Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein4e-0650.1
NC_004631:2366335:238643923864392386651213Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein4e-0650.1
NC_006511:2251022:227185322718532272065213Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein4e-0650.1
NC_011147:2247460:226703722670372267249213Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein4e-0650.1
NC_015566:1206500:120798912079891208201213Serratia sp. AS12 chromosome, complete genomehypothetical protein4e-0650.1
NC_015567:1206727:120817412081741208386213Serratia sp. AS9 chromosome, complete genomehypothetical protein4e-0650.1
NC_017208:1:307530753287213Bacillus thuringiensis serovar chinensis CT-43 chromosome, completehypothetical protein4e-0650.1
NC_015275:1:282728273033207Clostridium lentocellum DSM 5427 chromosome, complete genomeRNA-binding S4 domain protein6e-0649.7
NC_014171:1:307530753287213Bacillus thuringiensis BMB171 chromosome, complete genomehypothetical protein5e-0649.7
NC_014973:4630132:464848946484894648686198Geobacter sp. M18 chromosome, complete genomeRNA-binding S4 domain-containing protein5e-0649.7
NC_018664:1:285728573069213Clostridium acidurici 9a chromosome, complete genomeRNA-binding S4 domain-containing protein5e-0649.7
NC_007498:3085511:308898430889843089193210Pelobacter carbinolicus DSM 2380, complete genomeputative RNA-binding protein7e-0649.3
NC_010465:3431500:344656534465653446777213Yersinia pseudotuberculosis YPIII, complete genomehypothetical protein7e-0649.3
NC_020064:1150982:115527911552791155491213Serratia marcescens FGI94, complete genomehypothetical protein7e-0649.3
NC_006177:3549467:271827182945228Symbiobacterium thermophilum IAM 14863, complete genomehypothetical protein7e-0649.3
NC_016831:2402893:242220424222042422416213Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein7e-0649.3