Pre_GI: OUP Neighbours

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Query: NC_016945:666000 Vibrio cholerae IEC224 chromosome II, complete sequence

D: 31.171

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: It was isolated in November of 1994 at the city of Belém/Pa from a stool sample. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

Number of Neighbours: 108




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_005140:340000Vibrio vulnificus YJ016 chromosome II, complete sequence77.5705 %Subject ←→ Query26.4713
NC_005140:1820970Vibrio vulnificus YJ016 chromosome II, complete sequence80.3554 %Subject ←→ Query27.8788
NC_014966:638355Vibrio vulnificus MO6-24/O chromosome II, complete sequence76.3572 %Subject ←→ Query28.049
NC_018697:1343756*Cycloclasticus sp. P1 chromosome, complete genome75.7077 %Subject ←→ Query28.198
NC_010999:2450974*Lactobacillus casei, complete genome75.9344 %Subject ←→ Query28.2344
NC_014366:478000*Gamma proteobacterium HdN1, complete genome78.2292 %Subject ←→ Query28.2485
NC_017270:1755552*Vibrio cholerae LMA3984-4 chromosome chromosome I, complete76.6973 %Subject ←→ Query28.6114
NC_009138:668000Herminiimonas arsenicoxydans, complete genome75.7384 %Subject ←→ Query28.6266
NC_016901:4039335Shewanella baltica OS678 chromosome, complete genome75.6618 %Subject ←→ Query28.8303
NC_008526:74500*Lactobacillus casei ATCC 334, complete genome75.2482 %Subject ←→ Query28.9383
NC_009997:4091371Shewanella baltica OS195, complete genome75.7751 %Subject ←→ Query29.1038
NC_008322:641197*Shewanella sp. MR-7, complete genome77.0282 %Subject ←→ Query29.3288
NC_014966:795311Vibrio vulnificus MO6-24/O chromosome II, complete sequence80.3339 %Subject ←→ Query29.8334
NC_004460:973738Vibrio vulnificus CMCP6 chromosome II, complete sequence79.2524 %Subject ←→ Query30.5138
NC_015276:1037862Marinomonas mediterranea MMB-1 chromosome, complete genome76.3542 %Subject ←→ Query30.9217
NC_016628:133841*Vibrio furnissii NCTC 11218 chromosome 2, complete sequence77.2672 %Subject ←→ Query31.1568
NC_004459:1794540*Vibrio vulnificus CMCP6 chromosome I, complete sequence76.3726 %Subject ←→ Query31.6148
NC_013199:1966334*Lactobacillus rhamnosus Lc 705, complete genome75.6403 %Subject ←→ Query31.9404
NC_009654:4716417Marinomonas sp. MWYL1, complete genome76.3756 %Subject ←→ Query32.6103
NC_015581:1043394Thioalkalimicrobium cyclicum ALM1 chromosome, complete genome75.386 %Subject ←→ Query32.6716
NC_008577:4183361Shewanella sp. ANA-3 chromosome 1, complete sequence78.8205 %Subject ←→ Query32.7699
NC_002505:2537655*Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete79.4301 %Subject ←→ Query33.5512
NC_004460:1237129Vibrio vulnificus CMCP6 chromosome II, complete sequence79.9479 %Subject ←→ Query33.7123
NC_016944:168530Vibrio cholerae IEC224 chromosome I, complete sequence80.0061 %Subject ←→ Query33.8927
NC_015572:1Methylomonas methanica MC09 chromosome, complete genome76.8689 %Subject ←→ Query34.0009
NC_016628:935420Vibrio furnissii NCTC 11218 chromosome 2, complete sequence79.902 %Subject ←→ Query34.4218
NC_016445:89500Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, complete77.6685 %Subject ←→ Query34.6333
NC_010554:2646806Proteus mirabilis HI4320, complete genome81.9792 %Subject ←→ Query35.3988
NC_016445:2593800Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, complete80.0306 %Subject ←→ Query35.6263
NC_008526:1822000*Lactobacillus casei ATCC 334, complete genome75.3523 %Subject ←→ Query35.8686
NC_007645:3581114Hahella chejuensis KCTC 2396, complete genome76.9363 %Subject ←→ Query35.9091
NC_012667:46432*Vibrio cholerae MJ-1236 chromosome 2, complete genome77.7696 %Subject ←→ Query35.9314
NC_016628:1Vibrio furnissii NCTC 11218 chromosome 2, complete sequence75.8149 %Subject ←→ Query36.0135
NC_009456:998935*Vibrio cholerae O395 chromosome 1, complete sequence78.8787 %Subject ←→ Query36.0218
NC_012668:160357Vibrio cholerae MJ-1236 chromosome 1, complete sequence77.9075 %Subject ←→ Query36.6506
NC_010999:1979989*Lactobacillus casei, complete genome76.2132 %Subject ←→ Query36.6636
NC_012580:207025*Vibrio cholerae M66-2 chromosome II, complete sequence78.9583 %Subject ←→ Query36.8634
NC_014334:1775781*Lactobacillus casei str. Zhang chromosome, complete genome76.1244 %Subject ←→ Query36.9239
NC_012583:242760*Vibrio cholerae O395 chromosome chromosome II, complete sequence78.2384 %Subject ←→ Query36.9645
NC_016602:2037162*Vibrio furnissii NCTC 11218 chromosome 1, complete sequence76.5625 %Subject ←→ Query37.0927
NC_016602:2292518Vibrio furnissii NCTC 11218 chromosome 1, complete sequence79.7549 %Subject ←→ Query37.1565
NC_016446:979884*Vibrio cholerae O1 str. 2010EL-1786 chromosome 2, complete78.9706 %Subject ←→ Query37.3254
NC_002506:207097*Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete78.9583 %Subject ←→ Query37.898
NC_016945:207089*Vibrio cholerae IEC224 chromosome II, complete sequence79.0472 %Subject ←→ Query38.0893
NC_004349:3938Shewanella oneidensis MR-1 plasmid pMR-1, complete sequence76.8811 %Subject ←→ Query38.1809
NC_002505:168532Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete79.9694 %Subject ←→ Query38.3098
NC_016602:2586044*Vibrio furnissii NCTC 11218 chromosome 1, complete sequence75.3125 %Subject ←→ Query38.719
NC_016602:2854107Vibrio furnissii NCTC 11218 chromosome 1, complete sequence79.0962 %Subject ←→ Query39.7191
NC_016628:537137Vibrio furnissii NCTC 11218 chromosome 2, complete sequence75.4442 %Subject ←→ Query39.9714
NC_015554:4724245*Alteromonas sp. SN2 chromosome, complete genome77.9657 %Subject Query42.0329
NC_009092:1441813Shewanella loihica PV-4, complete genome75.5637 %Subject Query42.2476
NC_016628:763833Vibrio furnissii NCTC 11218 chromosome 2, complete sequence77.6226 %Subject Query43.5211
NC_008573:195317Shewanella sp. ANA-3 plasmid 1, complete sequence77.4295 %Subject Query46.5154
NC_010611:240839Acinetobacter baumannii ACICU, complete genome75.6036 %Subject Query48.2217