Pre_GI Gene

Some Help

Host: NC_012668 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012668:160357 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
1603571629212565TRAP-type transport system fused permease componentQuickGO ontologyBLASTP
163043163480438universal stress protein family 3QuickGO ontologyBLASTP
163502163612111hypothetical protein
163631164014384hypothetical proteinBLASTP
164083164880798beta-galactosidasebeta-glucuronidaseQuickGO ontology
165194165334141hypothetical proteinBLASTP
165601165957357hypothetical proteinBLASTP
1663781676971320HipA proteinQuickGO ontologyBLASTP
167687168226540hypothetical proteinBLASTP
168333168542210hypothetical proteinBLASTP
1686471702391593type I restriction-modification system DNA-methyltransferase subunit MQuickGO ontologyBLASTP
1702231714971275hypothetical proteinBLASTP
1715011752833783type I site-specific deoxyribonuclease HsdR familyQuickGO ontologyBLASTP
175505176401897hypothetical proteinBLASTP
1766601779671308hypothetical proteinBLASTP
178608179102495hypothetical proteinBLASTP
1791201803761257hypothetical proteinBLASTP
180366181148783hypothetical proteinBLASTP
1811451829891845hypothetical proteinBLASTP
1829891846141626hypothetical proteinBLASTP
184754185176423hypothetical proteinBLASTP
1859031871261224arginine deiminaseQuickGO ontologyBLASTP
1872221886671446TldD protein probably a proteaseQuickGO ontologyBLASTP
188667189494828hypothetical proteinBLASTP
1895031933423840hypothetical proteinBLASTP
1933911948601470ribonuclease GQuickGO ontologyBLASTP