Pre_GI Gene

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Host: NC_002505 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_002505:2537655 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is an epidemic serogroup of Vibrio cholerae isolated in 1971 in Bangladesh and is distinguished from the classical biotype due to hemolysin production. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
253765525421184464glutamate synthase large subunitQuickGO ontologyBLASTP
254213425435491416glutamate synthase small subunitQuickGO ontologyBLASTP
25437362544170435hypothetical proteinBLASTP
254425825449536965-methylthioadenosineS-adenosylhomocysteine nucleosidaseQuickGO ontologyBLASTP
25449662545919954adenosylcobinamide-phosphate synthaseQuickGO ontologyBLASTP
25459202546750831hypothetical proteinBLASTP
25467342547453720hypothetical proteinBLASTP
25476052548465861transcriptional regulator LysR familyQuickGO ontologyBLASTP
25483952549180786hypothetical proteinBLASTP
25496422550613972RNA-directed DNA polymeraseQuickGO ontologyBLASTP
255061425522361623hypothetical proteinBLASTP
25522492552866618hypothetical proteinBLASTP
25534772553959483hypothetical proteinBLASTP
255404925572793231carbamoyl-phosphate synthase large subunitQuickGO ontologyBLASTP
255729625584351140carbamoyl-phosphate synthase small subunitQuickGO ontologyBLASTP
25589182559727810dihydrodipicolinate reductaseQuickGO ontologyBLASTP
25598422560240399mutator MutT proteinQuickGO ontologyBLASTP
25602262560393168hypothetical proteinBLASTP
256039025631012712translocaseQuickGO ontologyBLASTP