Pre_GI Gene

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Host: NC_005140 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_005140:1820970 Vibrio vulnificus YJ016 chromosome II, complete sequence

Host Lineage: Vibrio vulnificus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a Biotype 1 hospital isolate from Taiwan. It contains larger chromosomes and >1000 genes as compared to Vibrio cholerae and contains a conjugative plasmid, pYJ016. There are numerous virulence factors including a cytolysin, protease, capsular polysaccharide as well as iron-uptake systems encoded in the genome. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Organisms of this species are opportunistic pathogens that can attack immunocompromised patients and causes gastroenteritis (inflammation of mucous membranes of stomach and intestine), wound infections, and primary septicemia (spread of the organism through the blood). This organism is the major cause of death from eating raw oysters, especially in people with liver damage. It only affects humans and other primates.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
182097018224301461putative PTS system sucrose-specific IIBC componentQuickGO ontologyBLASTP
182255118236541104putative outer membrane proteinQuickGO ontologyBLASTP
18237101824486777hypothetical proteinBLASTP
18246871825301615fructose-26-bisphosphataseQuickGO ontologyBLASTP
182558018280152436putative exoprotease VccQuickGO ontologyBLASTP
18282201828882663hypothetical proteinBLASTP
18293521829690339acetyl-CoA carboxylase beta subunitQuickGO ontologyBLASTP
182977218308031032putative regulatory proteinQuickGO ontologyBLASTP
18311961831675480hypothetical proteinBLASTP
183215218343112160putative toxin secretion ABC transporter ATP-binding subunitQuickGO ontologyBLASTP
183431118355911281membrane-fusion proteinQuickGO ontologyBLASTP
18365311836893363type I site-specific restriction-modification system R restriction subunitQuickGO ontologyBLASTP
183730818389811674predicted polymeraseQuickGO ontologyBLASTP
18390361839230195hypothetical protein
183920318408791677serine phosphatase RsbUQuickGO ontologyBLASTP
18408941841193300anti-anti-sigma regulatory factorQuickGO ontologyBLASTP
184123418424061173methyl-accepting chemotaxis proteinQuickGO ontologyBLASTP
184245918434961038chemotaxis response regulatorQuickGO ontologyBLASTP
18434931844137645chemotaxis proteinQuickGO ontologyBLASTP