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Query: NC_005140:1820970:1825580 Vibrio vulnificus YJ016 chromosome II, complete sequence

Start: 1825580, End: 1828015, Length: 2436

Host Lineage: Vibrio vulnificus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a Biotype 1 hospital isolate from Taiwan. It contains larger chromosomes and >1000 genes as compared to Vibrio cholerae and contains a conjugative plasmid, pYJ016. There are numerous virulence factors including a cytolysin, protease, capsular polysaccharide as well as iron-uptake systems encoded in the genome. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Organisms of this species are opportunistic pathogens that can attack immunocompromised patients and causes gastroenteritis (inflammation of mucous membranes of stomach and intestine), wound infections, and primary septicemia (spread of the organism through the blood). This organism is the major cause of death from eating raw oysters, especially in people with liver damage. It only affects humans and other primates.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004460:1237129:1241731124173112441542424Vibrio vulnificus CMCP6 chromosome II, complete sequencehypothetical protein01491
NC_004605:741000:7421107421107442272118Vibrio parahaemolyticus RIMD 2210633 chromosome II, completeputative collagenase2e-152540
NC_014815:4621552:4639058463905846416372580Micromonospora sp. L5 chromosome, complete genomemicrobial collagenase., xanthomonalisin1e-63245
NC_009075:937782:9576209576209596051986Burkholderia pseudomallei 668 chromosome II, complete sequencecollagenase1e-59231
NC_009078:862796:8834958834958854321938Burkholderia pseudomallei 1106a chromosome II, complete sequencecollagenase1e-59231
NC_006351:881655:9023579023579042941938Burkholderia pseudomallei K96243 chromosome 2, complete sequencecollagenase1e-59231
NC_007435:2701242:2721850272185027236671818Burkholderia pseudomallei 1710b chromosome II, complete sequencesubfamily M9A unassigned peptidase3e-59230
NC_009092:1935281:1935281193528119381872907Shewanella loihica PV-4, complete genomeMicrobial collagenase9e-59229
NC_003888:6470909:6477438647743864800352598Streptomyces coelicolor A3(2), complete genomeprobable secreted protease3e-58227
NC_009092:3239500:324206732420673242948882Shewanella loihica PV-4, complete genomeMicrobial collagenase2e-49198
NC_015424:525039:5261745261745289332760Aeromonas veronii B565 chromosome, complete genomeCollagenase family2e-38161
NC_008570:546736:5479285479285506752748Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomecollagenase family2e-37158
NC_009348:4011160:4012276401227640150232748Aeromonas salmonicida subsp. salmonicida A449, complete genomecollagenase2e-35151