Some Help

Query: NC_005140:1820970 Vibrio vulnificus YJ016 chromosome II, complete sequence

Start: 1820970, End: 1844137, Length: 23168

Host Lineage: Vibrio vulnificus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a Biotype 1 hospital isolate from Taiwan. It contains larger chromosomes and >1000 genes as compared to Vibrio cholerae and contains a conjugative plasmid, pYJ016. There are numerous virulence factors including a cytolysin, protease, capsular polysaccharide as well as iron-uptake systems encoded in the genome. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Organisms of this species are opportunistic pathogens that can attack immunocompromised patients and causes gastroenteritis (inflammation of mucous membranes of stomach and intestine), wound infections, and primary septicemia (spread of the organism through the blood). This organism is the major cause of death from eating raw oysters, especially in people with liver damage. It only affects humans and other primates.

Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_004460:12371291237129126309925971Vibrio vulnificus CMCP6 chromosome II, complete sequence014690BLASTN svgBLASTP svg
NC_009784:12317911231791125420022410Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence1e-51212BLASTN svgBLASTP svg
NC_009783:16370001637000165503318034Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequence1e-51212BLASTN svgBLASTP svg
NC_008577:3738758*3738758376351324756Shewanella sp. ANA-3 chromosome 1, complete sequence3e-1281.8BLASTN svgBLASTP svg
NC_019902:1061432*1061432109961938188Thioalkalivibrio nitratireducens DSM 14787, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_008750:80744680744683071223267Shewanella sp. W3-18-1, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015437:76757276757279017322602Selenomonas sputigena ATCC 35185 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_011206:17926211792621181274020120Acidithiobacillus ferrooxidans ATCC 53993, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_005140:96026196026198150721247Vibrio vulnificus YJ016 chromosome II, complete sequence7e-0763.9BLASTN svgBLASTP svg
NC_020209:47504*4750412622978726Pseudomonas poae RE*1-1-14, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013421:4714478*4714478478002665549Pectobacterium wasabiae WPP163, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_012660:1579204*1579204162109241889Pseudomonas fluorescens SBW25 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg