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Query: NC_005140:1820970:1840894 Vibrio vulnificus YJ016 chromosome II, complete sequence

Start: 1840894, End: 1841193, Length: 300

Host Lineage: Vibrio vulnificus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a Biotype 1 hospital isolate from Taiwan. It contains larger chromosomes and >1000 genes as compared to Vibrio cholerae and contains a conjugative plasmid, pYJ016. There are numerous virulence factors including a cytolysin, protease, capsular polysaccharide as well as iron-uptake systems encoded in the genome. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Organisms of this species are opportunistic pathogens that can attack immunocompromised patients and causes gastroenteritis (inflammation of mucous membranes of stomach and intestine), wound infections, and primary septicemia (spread of the organism through the blood). This organism is the major cause of death from eating raw oysters, especially in people with liver damage. It only affects humans and other primates.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004460:1237129:125657912565791256878300Vibrio vulnificus CMCP6 chromosome II, complete sequenceAnti-anti-sigma regulatory factor4e-52202
NC_007645:3227098:324000332400033240320318Hahella chejuensis KCTC 2396, complete genomeAnti-anti-sigma regulatory factor (antagonist of anti-sigma factor)8e-1682.4
NC_021150:3505234:350945135094513509756306Azotobacter vinelandii CA6, complete genomeantisigma-factor antagonist STAS domain protein3e-1477
NC_012560:3505235:350945235094523509757306Azotobacter vinelandii DJ, complete genomeantisigma-factor antagonist STAS domain protein3e-1477
NC_010501:4080937:410377341037734104078306Pseudomonas putida W619, complete genomeanti-sigma-factor antagonist4e-1270.1
NC_002947:4931476:495443949544394954744306Pseudomonas putida KT2440, complete genomeanti-sigma F factor antagonist, putative2e-1168.2
NC_007912:2768363:277404127740412774430390Saccharophagus degradans 2-40, complete genomeFlagellar basal-body rod protein FlgB1e-0961.6
NC_007298:778723:804899804899805204306Dechloromonas aromatica RCB, complete genomeSulfate transporter/antisigma-factor antagonist STAS3e-0753.9
NC_009922:1:949694969813318Alkaliphilus oremlandii OhILAs, complete genomeanti-sigma-factor antagonist5e-0753.1
NC_011898:426951:451241451241451558318Clostridium cellulolyticum H10, complete genomeanti-sigma-factor antagonist8e-0752.4
NC_014614:6115:108291082911149321Clostridium sticklandii, complete genomeanti sigma b factor antagonist RsbV1e-0652
NC_009454:1246393:126467812646781265025348Pelotomaculum thermopropionicum SI, complete genomeanti-anti-sigma regulatory factor3e-0650.4
NC_018664:1:915791579474318Clostridium acidurici 9a chromosome, complete genomeanti-sigma F factor antagonist SpoIIAA4e-0650.1
NC_009654:3849774:388386738838673884169303Marinomonas sp. MWYL1, complete genomeanti-sigma-factor antagonist5e-0649.7