Pre_GI: OUP Neighbours

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Query: NC_005140:1820970 Vibrio vulnificus YJ016 chromosome II, complete sequence

D: 27.8788

Host Lineage: Vibrio vulnificus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a Biotype 1 hospital isolate from Taiwan. It contains larger chromosomes and >1000 genes as compared to Vibrio cholerae and contains a conjugative plasmid, pYJ016. There are numerous virulence factors including a cytolysin, protease, capsular polysaccharide as well as iron-uptake systems encoded in the genome. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Organisms of this species are opportunistic pathogens that can attack immunocompromised patients and causes gastroenteritis (inflammation of mucous membranes of stomach and intestine), wound infections, and primary septicemia (spread of the organism through the blood). This organism is the major cause of death from eating raw oysters, especially in people with liver damage. It only affects humans and other primates.

Number of Neighbours: 29

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_005140:340000Vibrio vulnificus YJ016 chromosome II, complete sequence79.7825 %Subject ←→ Query26.4713
NC_009052:144619*Shewanella baltica OS155, complete genome76.0018 %Subject ←→ Query27.7085
NC_011753:3088952*Vibrio splendidus LGP32 chromosome 1, complete genome75.242 %Subject ←→ Query27.9102
NC_005140:960261Vibrio vulnificus YJ016 chromosome II, complete sequence77.5306 %Subject ←→ Query28.0411
NC_009138:668000Herminiimonas arsenicoxydans, complete genome75.4596 %Subject ←→ Query28.6266
NC_008526:74500*Lactobacillus casei ATCC 334, complete genome76.2561 %Subject ←→ Query28.9383
NC_009997:4091371Shewanella baltica OS195, complete genome77.402 %Subject ←→ Query29.1038
NC_004460:1618892Vibrio vulnificus CMCP6 chromosome II, complete sequence78.7194 %Subject ←→ Query29.7179
NC_015276:565701Marinomonas mediterranea MMB-1 chromosome, complete genome75.9804 %Subject ←→ Query29.7331
NC_004460:973738Vibrio vulnificus CMCP6 chromosome II, complete sequence82.0558 %Subject ←→ Query30.5138
NC_008321:2190000Shewanella sp. MR-4, complete genome75.2237 %Subject ←→ Query30.7271
NC_015276:1037862Marinomonas mediterranea MMB-1 chromosome, complete genome75.4412 %Subject ←→ Query30.9217
NC_004459:1794540*Vibrio vulnificus CMCP6 chromosome I, complete sequence81.9118 %Subject ←→ Query31.6148
NC_015276:855150Marinomonas mediterranea MMB-1 chromosome, complete genome75.2175 %Subject ←→ Query32.162
NC_009654:4716417Marinomonas sp. MWYL1, complete genome76.6881 %Subject ←→ Query32.6103
NC_014334:589526Lactobacillus casei str. Zhang chromosome, complete genome76.5288 %Subject ←→ Query32.7578
NC_002505:980595Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete75.193 %Subject ←→ Query33.004
NC_004460:1313468Vibrio vulnificus CMCP6 chromosome II, complete sequence80 %Subject ←→ Query33.3414
NC_015559:3645181Marinomonas posidonica IVIA-Po-181 chromosome, complete genome76.9577 %Subject ←→ Query33.4326
NC_002505:2537655*Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete79.6446 %Subject ←→ Query33.5512
NC_002505:1550108Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete77.0864 %Subject ←→ Query34.6547
NC_015559:2434000*Marinomonas posidonica IVIA-Po-181 chromosome, complete genome75.8241 %Subject ←→ Query34.7215
NC_010554:2646806Proteus mirabilis HI4320, complete genome81.5717 %Subject ←→ Query35.3988
NC_004459:1679335*Vibrio vulnificus CMCP6 chromosome I, complete sequence76.6023 %Subject ←→ Query35.7874
NC_013457:979102*Vibrio sp. Ex25 chromosome 2, complete genome77.1691 %Subject ←→ Query36.055
NC_010995:4525119Cellvibrio japonicus Ueda107, complete genome75.6403 %Subject ←→ Query36.7553
NC_002506:207097*Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete81.2898 %Subject Query37.898
NC_002505:168532Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete80.4381 %Subject Query38.3098
NC_010611:240839Acinetobacter baumannii ACICU, complete genome75.432 %Subject Query48.2217