Pre_GI: BLASTP Hits

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Query: NC_005140:1820970:1836531 Vibrio vulnificus YJ016 chromosome II, complete sequence

Start: 1836531, End: 1836893, Length: 363

Host Lineage: Vibrio vulnificus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a Biotype 1 hospital isolate from Taiwan. It contains larger chromosomes and >1000 genes as compared to Vibrio cholerae and contains a conjugative plasmid, pYJ016. There are numerous virulence factors including a cytolysin, protease, capsular polysaccharide as well as iron-uptake systems encoded in the genome. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Organisms of this species are opportunistic pathogens that can attack immunocompromised patients and causes gastroenteritis (inflammation of mucous membranes of stomach and intestine), wound infections, and primary septicemia (spread of the organism through the blood). This organism is the major cause of death from eating raw oysters, especially in people with liver damage. It only affects humans and other primates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016613:2596464:2610213261021326134403228Vibrio sp. EJY3 chromosome 1, complete sequenceHsdR family type I site-specific deoxyribonuclease2e-34144
NC_014315:1396990:1414766141476614179243159Nitrosococcus watsoni C-113 chromosome, complete genomeHsdR family type I site-specific deoxyribonuclease6e-26115
NC_004757:427483:4329294329294360783150Nitrosomonas europaea ATCC 19718, complete genomeRestriction enzyme type I helicase subunits and related helicases1e-24111
NC_020541:4122852:4145366414536641485813216Rhodanobacter sp. 2APBS1, complete genometype I site-specific deoxyribonuclease, HsdR family1e-23108
NC_007948:1972290:2004590200459020076943105Polaromonas sp. JS666, complete genometype I site-specific deoxyribonuclease, HsdR family2e-23107
NC_008609:1976403:1993572199357219966523081Pelobacter propionicus DSM 2379, complete genometype I site-specific deoxyribonuclease, HsdR family3e-23107
NC_020260:603796:6153756153756185063132Cronobacter sakazakii Sp291, complete genomehypothetical protein6e-23106
NC_009778:567000:5863505863505894813132Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein5e-23106
NC_011992:1968258:1985201198520119877682568Acidovorax ebreus TPSY, complete genometype I site-specific deoxyribonuclease, HsdR family8e-23105
NC_015740:3631326:3636307363630736394083102Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completetype I restriction-modification enzyme, R subunit2e-22103
NC_015458:2338437:2365206236520623684303225Pusillimonas sp. T7-7 chromosome, complete genomeHsdR family type I site-specific deoxyribonuclease1e-2098.6
NC_015138:5342473:5346115534611553493183204Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completetype I site-specific deoxyribonuclease, HsdR family1e-2098.2
NC_004578:1190000:1195573119557311986953123Pseudomonas syringae pv. tomato str. DC3000, complete genometype I restriction-modification enzyme, R subunit, putative1e-2098.2
NC_007951:4608560:4611434461143446145203087Burkholderia xenovorans LB400 chromosome 1, complete sequenceType I site-specific deoxyribonuclease HsdR6e-2096.3
NC_010617:558954:5720755720755752093135Kocuria rhizophila DC2201, complete genometype I restriction enzyme R protein2e-1994.7
NC_015634:3017564:3030763303076330340443282Bacillus coagulans 2-6 chromosome, complete genometype I site-specific deoxyribonuclease9e-1992
NC_008541:1042322:1063872106387210669943123Arthrobacter sp. FB24 chromosome 1, complete sequencetype I site-specific deoxyribonuclease, HsdR family2e-1891.3
NC_010175:2488000:2497678249767825008123135Chloroflexus aurantiacus J-10-fl, complete genometype I site-specific deoxyribonuclease, HsdR family3e-1890.1
NC_015966:1661329:1664443166444316676553213Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomeHsdR family type I site-specific deoxyribonuclease6e-1889.4
NC_008009:4421992:4435635443563544387243090Acidobacteria bacterium Ellin345, complete genometype I site-specific deoxyribonuclease, HsdR family9e-1889
NC_021184:1024305:1026603102660310298363234Desulfotomaculum gibsoniae DSM 7213, complete genometype I site-specific deoxyribonuclease, HsdR family1e-1788.6
NC_013943:2705983:2717489271748927205753087Denitrovibrio acetiphilus DSM 12809 chromosome, complete genomeHsdR family type I site-specific deoxyribonuclease1e-1788.2
NC_015847:808931:8206928206928237903099Methanococcus maripaludis XI chromosome, complete genomeHsdR family type I site-specific deoxyribonuclease5e-1786.7
NC_012968:239476:2425242425242457453222Methylotenera mobilis JLW8, complete genometype I site-specific deoxyribonuclease, HsdR family5e-1786.3
NC_012489:209016:2090162090162121653150Gemmatimonas aurantiaca T-27, complete genometype I restriction-modification system restriction subunit1e-1684.7
NC_015696:285456:2978402978403009893150Francisella sp. TX077308 chromosome, complete genometype I restriction-modification system, R subunit3e-1684
NC_007651:3064530:3147581314758131507363156Burkholderia thailandensis E264 chromosome I, complete sequencetype I restriction-modification system endonuclease3e-1684
NC_011185:37922:4789947899509853087Vibrio fischeri MJ11 plasmid pMJ100, complete sequencetype I site-specific deoxyribonuclease3e-1580.5
NC_008344:554229:5591105591105623283219Nitrosomonas eutropha C91, complete genometype I site-specific deoxyribonuclease, HsdR family protein3e-1580.5
NC_008786:3323167:3360938336093833641503213Verminephrobacter eiseniae EF01-2, complete genometype I site-specific deoxyribonuclease, HsdR family3e-1580.5
NC_010163:614634:6241646241646273073144Acholeplasma laidlawii PG-8A chromosome, complete genometype I site-specific restriction-modification system, R (restriction) subunit4e-1580.1
NC_015580:293803:2998742998743030143141Novosphingobium sp. PP1Y, complete genomeputative type I restriction-modification system HsdR4e-1580.1
NC_011206:2369500:2379805237980523828733069Acidithiobacillus ferrooxidans ATCC 53993, complete genometype I site-specific deoxyribonuclease, HsdR family7e-1579.3
NC_009523:341347:3564713564713595573087Roseiflexus sp. RS-1 chromosome, complete genomeHsdR family type I site-specific deoxyribonuclease9e-1579
NC_012881:3004784:3004784300478430079153132Desulfovibrio salexigens DSM 2638, complete genometype I site-specific deoxyribonuclease, HsdR family9e-1579
NC_015676:1530000:1546589154658915497533165Methanosalsum zhilinae DSM 4017 chromosome, complete genometype I site-specific deoxyribonuclease, HsdR family4e-1476.6
NC_010995:4338860:4344576434457643477883213Cellvibrio japonicus Ueda107, complete genomeHsdR6e-1476.3
NC_002163:1471517:1479390147939014824853096Campylobacter jejuni subsp. jejuni NCTC 11168, complete genomeputative type I restriction enzyme R protein5e-1476.3
NC_018867:1407163:1439736143973614429303195Dehalobacter sp. CF chromosome, complete genomeType I restriction-modification system, restriction subunit R5e-1476.3
NC_014011:472650:4821084821084853023195Aminobacterium colombiense DSM 12261 chromosome, complete genometype I site-specific deoxyribonuclease, HsdR family1e-1375.1
NC_007759:2097734:2118210211821021213413132Syntrophus aciditrophicus SB, complete genometype I restriction-modification system restriction subunit2e-1374.3
NC_011886:1176238:1202179120217912054033225Arthrobacter chlorophenolicus A6, complete genometype I site-specific deoxyribonuclease, HsdR family2e-1270.9
NC_011884:3099488:3114437311443731175983162Cyanothece sp. PCC 7425, complete genometype I site-specific deoxyribonuclease, HsdR family2e-1270.9
NC_014210:3671495:3686800368680036900573258Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,type I site-specific deoxyribonuclease, HsdR family3e-1270.5
NC_007677:1354500:1385496138549613886453150Salinibacter ruber DSM 13855, complete genomeHsdR5e-1269.7
NC_009801:2898426:2915437291543729186763240Escherichia coli E24377A, complete genometype I site-specific deoxyribonuclease, HsdR family6e-1269.3
NC_016629:3789554:3801760380176038048223063Desulfovibrio africanus str. Walvis Bay chromosome, completeHsdR family type I site-specific deoxyribonuclease5e-1063.2
NC_004369:2465461:2476654247665424798543201Corynebacterium efficiens YS-314, complete genomeputative type I restriction-modification system subunit R8e-1062.4
NC_013235:1218378:1227836122783612310363201Nakamurella multipartita DSM 44233, complete genometype I site-specific deoxyribonuclease, HsdR family9e-1062.4
NC_015588:939037:9574719574719607673297Isoptericola variabilis 225 chromosome, complete genometype I site-specific deoxyribonuclease, HsdR family1e-0961.6
NC_013595:8338619:8348071834807183512893219Streptosporangium roseum DSM 43021, complete genomeHsdR family type I site-specific deoxyribonuclease3e-0960.5
NC_014165:2928464:2934819293481929380253207Thermobispora bispora DSM 43833 chromosome, complete genomeHsdR family type I site-specific deoxyribonuclease7e-0959.3
NC_017080:3317701:3329289332928933325043216Phycisphaera mikurensis NBRC 102666, complete genometype I restriction-modification system restriction subunit9e-0958.9
NC_017093:7255652:7267831726783172710493219Actinoplanes missouriensis 431, complete genomeputative restriction-modification system endonuclease2e-0857.8
NC_012669:4323490:4325841432584143291343294Beutenbergia cavernae DSM 12333, complete genometype I site-specific deoxyribonuclease, HsdR family3e-0857.4
NC_013222:817686:8330478330478360493003Robiginitalea biformata HTCC2501, complete genomeHsdR1e-0755.1
NC_018721:943801:9515369515369545383003Psychroflexus torquis ATCC 700755 chromosome, complete genomeType I restriction-modification system, restriction subunit HsdR2e-0651.6
NC_012793:1718000:1718140171814017211513012Geobacillus sp. WCH70, complete genometype I site-specific deoxyribonuclease, HsdR family4e-0650.1
NC_014915:2427000:2441753244175324447643012Geobacillus sp. Y412MC52 chromosome, complete genometype I site-specific deoxyribonuclease, HsdR family6e-0649.3
NC_013411:284461:2947242947242977353012Geobacillus sp. Y412MC61, complete genometype I site-specific deoxyribonuclease, HsdR family6e-0649.3