Pre_GI Gene

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Host: NC_012583 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012583:242760 Vibrio cholerae O395 chromosome chromosome II, complete sequence

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae O395 is a classical O1 serotype strain of the Ogawa biotype. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
242104242763660hypothetical proteinBLASTP
2427602445981839putative tail fiber proteinQuickGO ontologyBLASTP
244598245122525putative tail fiber assembly proteinQuickGO ontologyBLASTP
245125246018894hypothetical proteinBLASTP
246006246479474hypothetical proteinBLASTP
2464762481071632hypothetical proteinBLASTP
2494492506001152putative site-specific DNA-methyltransferaseQuickGO ontologyBLASTP
2507242526401917hypothetical proteinBLASTP
2526332537571125hypothetical proteinBLASTP
253754254632879hypothetical proteinBLASTP
254700255137438IS1004 transposaseQuickGO ontologyBLASTP
2556422569971356ATP-dependent RNA helicase RhlEQuickGO ontologyBLASTP
2571872585151329C4-dicarboxylate transporter anaerobicQuickGO ontologyBLASTP
258766259596831NH3-dependent NAD synthetaseQuickGO ontologyBLASTP
259699260226528hypothetical proteinBLASTP
260177260359183hypothetical proteinBLASTP
2604662620341569putative response regulatorQuickGO ontologyBLASTP
2620922640381947sensory box sensor histidine kinaseQuickGO ontologyBLASTP
2642132652621050hypothetical proteinBLASTP
2653402669291590hypothetical proteinBLASTP