Pre_GI: BLASTP Hits

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Query: NC_010322:4623867:4637043 Pseudomonas putida GB-1 chromosome, complete genome

Start: 4637043, End: 4638140, Length: 1098

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010830:1069666:1084709108470910867632055Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein2e-29129
NC_007614:109000:1097271097271111961470Nitrosospira multiformis ATCC 25196 chromosome 1, completeSel1-like repeat3e-29129
NC_010830:475248:507427507427508383957Candidatus Amoebophilus asiaticus 5a2, complete genome5e-29129
NC_010830:1543548:1551922155192215561304209Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein2e-28126
NC_010830:1069666:1080998108099810833672370Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein2e-28126
NC_015731:313676:315414315414316016603Nitrosomonas sp. Is79A3 chromosome, complete genomeSel1 domain-containing protein3e-27123
NC_010830:1069666:1078070107807010809552886Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein4e-27122
NC_010830:1124500:1137798113779811422794482Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein3e-26119
NC_014394:1989418:199750619975061998492987Gallionella capsiferriformans ES-2 chromosome, complete genomeSel1 domain-containing protein repeat-containing protein3e-26119
NC_010830:1637598:1645106164510616473012196Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein6e-25115
NC_010830:475248:5044185044185074263009Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein1e-24114
NC_013740:1178370:1187448118744811893971950Acidaminococcus fermentans DSM 20731, complete genomeSel1 domain protein repeat-containing protein4e-24112
NC_010830:384812:3939843939844012257242Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein5e-24112
NC_006138:225832:2412732412732423401068Desulfotalea psychrophila LSv54, complete genomesimilar to TPR repeat proteins9e-24111
NC_020908:1472981:148604014860401486744705Octadecabacter arcticus 238, complete genomesel-1-like repeats-containing protein2e-23110
NC_020908:2571943:259270125927012593405705Octadecabacter arcticus 238, complete genome3e-23109
NC_020418:2084937:209256220925622093266705Morganella morganii subsp. morganii KT, complete genomehypothetical protein9e-23108
NC_007946:1119000:1127725112772511288611137Escherichia coli UTI89, complete genomehypothetical protein1e-22107
NC_013959:1195249:120238612023861203339954Sideroxydans lithotrophicus ES-1 chromosome, complete genomeSel1 domain protein repeat-containing protein1e-22107
NC_010830:1543548:1556591155659115582491659Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein1e-22107
NC_004431:1211000:1219723121972312208591137Escherichia coli CFT073, complete genomehypothetical protein2e-22107
NC_015581:1731120:1737854173785417389481095Thioalkalimicrobium cyclicum ALM1 chromosome, complete genomeSel1 domain-containing protein repeat-containing protein3e-22106
NC_010830:1543548:154751615475161548430915Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein7e-22105
NC_010830:1124500:1130165113016511357985634Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein2e-21103
NC_014394:1594071:1605189160518916064091221Gallionella capsiferriformans ES-2 chromosome, complete genomeSel1 domain-containing protein repeat-containing protein7e-21101
NC_016048:1625812:1638521163852116414302910Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein1e-20101
NC_016002:1048420:106260910626091063160552Pseudogulbenkiania sp. NH8B, complete genomeSel1 repeat-containing protein5e-2099
NC_015873:2197412:219972421997242200527804Megasphaera elsdenii DSM 20460, complete genomesel1 repeat protein2e-1996.7
NC_017059:1:587658766664789Rhodospirillum photometricum DSM 122, complete genomeTPR repeat SEL1 subfamily5e-1995.5
NC_011149:1110642:112113511211351122100966Salmonella enterica subsp. enterica serovar Agona str. SL483,Sel1 domain protein repeat-containing protein6e-1995.1
NC_015572:1:2116221162237652604Methylomonas methanica MC09 chromosome, complete genomeSel1 domain-containing protein repeat-containing protein7e-1995.1
NC_014033:395000:4039554039554072753321Prevotella ruminicola 23 chromosome, complete genomehypothetical protein3e-1893.2
NC_020541:2487427:2496873249687324984621590Rhodanobacter sp. 2APBS1, complete genomeTonB family protein9e-1891.3
NC_016026:1969766:1972636197263619747802145Micavibrio aeruginosavorus ARL-13 chromosome, complete genomeputative peptidoglycan binding domain-containing protein2e-1790.5
NC_011894:6295807:630494763049476305897951Methylobacterium nodulans ORS 2060, complete genomeSel1 domain protein repeat-containing protein3e-1789.7
NC_015572:2186394:2191242219124221929961755Methylomonas methanica MC09 chromosome, complete genomeSel1 domain-containing protein repeat-containing protein4e-1789.4
NC_013355:1332263:133712113371211338068948Zymomonas mobilis subsp. mobilis NCIB 11163, complete genomeSel1 domain protein repeat-containing protein7e-1788.6
NC_020063:1194000:1200666120066612017361071Enterobacteriaceae bacterium strain FGI 57, complete genomeTPR repeat-containing protein7e-1788.6
NC_005085:24623:484624846249127666Chromobacterium violaceum ATCC 12472, complete genomehypothetical protein8e-1788.2
NC_020908:2571943:259082325908232591314492Octadecabacter arcticus 238, complete genome3e-1686.3
NC_010337:803748:842510842510843208699Heliobacterium modesticaldum Ice1, complete genomehypothetical protein6e-1685.5
NC_008347:3034100:3047264304726430485111248Maricaulis maris MCS10, complete genomeSel1 domain protein repeat-containing protein8e-1685.1
NC_011146:1293202:130488213048821305700819Geobacter bemidjiensis Bem, complete genomeSel1 domain protein repeat-containing protein3e-1583.2
NC_016609:5763357:5770469577046957715811113Niastella koreensis GR20-10 chromosome, complete genomeSel1 domain-containing protein repeat-containing protein4e-1582.8
NC_007512:944941:9620849620849635321449Pelodictyon luteolum DSM 273, complete genomeSel1-like repeat3e-1479.7
NC_014914:1327245:134485313448531345323471Taylorella equigenitalis MCE9 chromosome, complete genomehypothetical protein5e-1479
NC_011274:1129686:114833411483341148786453Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein2e-1376.6
NC_011294:1085447:111163511116351112087453Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein2e-1376.6
NC_013355:1332263:1332263133226313340621800Zymomonas mobilis subsp. mobilis NCIB 11163, complete genomeSel1 domain protein repeat-containing protein3e-1376.3
NC_002939:2617037:262864526286452629286642Geobacter sulfurreducens PCA, complete genomehypothetical protein5e-1375.5
NC_021184:3533500:3553185355318535558092625Desulfotomaculum gibsoniae DSM 7213, complete genomeTPR repeat-containing protein5e-1375.5
NC_009445:7324977:7339392733939273413441953Bradyrhizobium sp. ORS 278 chromosome, complete genomehypothetical protein6e-1375.5
NC_013892:853366:873398873398874201804Xenorhabdus bovienii SS-2004 chromosome, complete genomebeta-lactamase1e-1274.3
NC_018866:1279000:1285657128565712883352679Dehalobacter sp. DCA chromosome, complete genomehypothetical protein1e-1274.3
NC_018867:1357540:1364197136419713668752679Dehalobacter sp. CF chromosome, complete genomehypothetical protein1e-1274.3
NC_017171:1331794:133179413317941332264471Acinetobacter baumannii MDR-ZJ06 chromosome, complete genomeTPR repeat-containing SEL1 subfamily protein1e-1274.3
NC_020908:2571943:2587957258795725891591203Octadecabacter arcticus 238, complete genomeputative Sel1-like protein2e-1273.6
NC_010830:1171781:1177610117761011814553846Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein3e-1273.2
NC_016791:3953972:3986298398629839893123015Clostridium sp. BNL1100 chromosome, complete genomehypothetical protein6e-1272
NC_000921:1147394:116131911613191162089771Helicobacter pylori J99, complete genomehypothetical protein8e-1271.6
NC_009663:2500186:250582425058242506462639Sulfurovum sp. NBC37-1, complete genomehypothetical protein9e-1271.6
NC_019903:1345585:1386162138616213890682907Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,hypothetical protein1e-1171.2
NC_016831:1865681:187637818763781876608231Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein2e-1170.1
NC_004757:267165:2743522743522774503099Nitrosomonas europaea ATCC 19718, complete genomehypothetical protein3e-1169.7
NC_010337:616304:6163046163046180881785Heliobacterium modesticaldum Ice1, complete genomehypothetical protein6e-1168.6
NC_008347:3034100:3048523304852330497341212Maricaulis maris MCS10, complete genomeSel1 domain protein repeat-containing protein1e-1067.4
NC_015717:2479394:247939424793942480197804Hyphomicrobium sp. MC1, complete genomeSel1 domain-containing protein repeat-containing protein (fragment)4e-1066.2
NC_017078:179848:1930951930951944291335Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC1,hypothetical protein3e-1066.2
NC_011205:2180598:2216872221687222190402169Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853tetratricopeptide repeat protein3e-1066.2
NC_011274:2044000:2080992208099220831602169Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein3e-1066.2
NC_011294:2053991:2089859208985920920272169Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein3e-1066.2
NC_016831:947281:9514279514279535952169Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein3e-1066.2
NC_010102:997417:99920499920410013722169Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein5e-1065.9
NC_006155:2334122:2334122233412223362842163Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein4e-1065.9
NC_010634:2252329:2252329225232922544912163Yersinia pseudotuberculosis PB1/+, complete genomeSel1 domain-containing protein4e-1065.9
NC_016002:1741109:1751412175141217531091698Pseudogulbenkiania sp. NH8B, complete genomeSel1 domain-containing protein6e-1065.5
NC_016002:2179969:2189763218976321914601698Pseudogulbenkiania sp. NH8B, complete genomeSel1 domain-containing protein6e-1065.5
NC_013440:1436784:1444937144493714464001464Haliangium ochraceum DSM 14365, complete genomeSel1 domain protein repeat-containing protein6e-1065.5
NC_008149:1669921:1669921166992116720832163Yersinia pestis Nepal516, complete genomehypothetical protein6e-1065.5
NC_003143:2258636:2258636225863622607982163Yersinia pestis CO92, complete genomehypothetical protein6e-1065.5
NC_008150:1543635:1543635154363515457972163Yersinia pestis Antiqua, complete genomehypothetical protein6e-1065.5
NC_004088:2541033:2556053255605325582152163Yersinia pestis KIM, complete genomehypothetical protein6e-1065.5
NC_014029:2335021:2350041235004123522032163Yersinia pestis Z176003 chromosome, complete genomehypothetical protein6e-1065.5
NC_009708:2392640:2407661240766124098232163Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein5e-1065.5
NC_010465:2428620:2443628244362824457902163Yersinia pseudotuberculosis YPIII, complete genomeSel1 domain protein repeat-containing protein5e-1065.5
NC_009381:1258396:1272647127264712748092163Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein6e-1065.5
NC_005810:2043730:2043730204373020458922163Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein6e-1065.5
NC_017265:2263347:2277011227701122791732163Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein6e-1065.5
NC_017154:2258228:2258228225822822603902163Yersinia pestis D106004 chromosome, complete genomehypothetical protein6e-1065.5
NC_016048:4163225:4203176420317642059772802Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein7e-1065.1
NC_011149:1987291:2030281203028120324492169Salmonella enterica subsp. enterica serovar Agona str. SL483,tetratricopeptide repeat protein8e-1065.1
NC_010830:923266:9301679301679342674101Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein2e-0963.9
NC_018870:757416:7789717789717807461776Thermacetogenium phaeum DSM 12270 chromosome, complete genomeserine threonine protein phosphatase 52e-0963.5
NC_015275:2712991:2728346272834627293981053Clostridium lentocellum DSM 5427 chromosome, complete genomeSel1 domain protein repeat-containing protein2e-0963.5
NC_015578:3011133:3022690302269030248432154Treponema primitia ZAS-2 chromosome, complete genomeSel1 domain-containing protein3e-0962.8
NC_009256:3540531:354177935417793542633855Burkholderia vietnamiensis G4 chromosome 1, complete sequenceSel1 domain-containing protein4e-0962.8
NC_008570:1986466:1996643199664319980311389Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomehypothetical protein6e-0962.4
NC_017192:683493:683493683493684224732Arcobacter sp. L, complete genomehypothetical protein6e-0962
NC_015731:313676:317232317232317564333Nitrosomonas sp. Is79A3 chromosome, complete genomeSel1 domain-containing protein9e-0961.6
NC_008570:2216736:2250885225088522519491065Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomehypothetical protein1e-0861.2
NC_013517:366234:389899389899390735837Sebaldella termitidis ATCC 33386, complete genomeSel1 domain protein repeat-containing protein4e-0859.3
NC_008258:401786:4104884104884126412154Shigella flexneri 5 str. 8401, complete genomehypothetical protein5e-0859.3
NC_009075:1638789:164103716410371641783747Burkholderia pseudomallei 668 chromosome II, complete sequenceFOG TPR repeat, SEL1 subfamily5e-0858.9
NC_010830:692469:6924696924696958733405Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein7e-0858.5
NC_004663:4373902:4380147438014743812921146Bacteroides thetaiotaomicron VPI-5482, complete genomehypothetical protein7e-0858.5
NC_016048:2907702:2908133290813329100821950Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein9e-0858.2
NC_014972:2089003:210678821067882107624837Desulfobulbus propionicus DSM 2032 chromosome, complete genomeSel1 domain-containing protein repeat-containing protein2e-0757.4
NC_010830:1637598:1647697164769716525054809Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein2e-0757.4
NC_004741:366822:3755243755243776772154Shigella flexneri 2a str. 2457T, complete genomehypothetical protein2e-0757
NC_004337:367687:3763903763903785432154Shigella flexneri 2a str. 301, complete genomehypothetical protein2e-0757
NC_014828:2657623:2659251265925126633844134Ethanoligenens harbinense YUAN-3 chromosome, complete genomeSel1 domain protein repeat-containing protein2e-0757
NC_017328:385552:3942543942543966772424Shigella flexneri 2002017 chromosome, complete genomehypothetical protein2e-0757
NC_009706:3882500:3911122391112239139202799Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein2e-0757
NC_011837:3814000:3842625384262538454232799Clostridium kluyveri NBRC 12016, complete genomehypothetical protein2e-0757
NC_007907:5185510:5266735526673552684081674Desulfitobacterium hafniense Y51, complete genomehypothetical protein3e-0756.6
NC_013720:361785:380614380614381453840Pirellula staleyi DSM 6068, complete genomeSel1 domain protein repeat-containing protein9e-0755.1
NC_015276:3321277:333708633370863337595510Marinomonas mediterranea MMB-1 chromosome, complete genomeSel1 domain protein repeat-containing protein1e-0654.7
NC_011146:1293202:130614113061411306566426Geobacter bemidjiensis Bem, complete genomeSel1 domain protein repeat-containing protein1e-0654.7
NC_014376:3009403:3037482303748230401602679Clostridium saccharolyticum WM1 chromosome, complete genomeSel1 domain protein repeat-containing protein2e-0653.9
NC_011294:1085447:111215011121501112599450Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein2e-0653.9
NC_018000:2964500:2979167297916729813082142Sinorhizobium fredii USDA 257 chromosome, complete genomehypothetical protein2e-0653.9
NC_014010:1392536:1417827141782714189601134Candidatus Puniceispirillum marinum IMCC1322 chromosome, completeSel1-like repeat protein2e-0653.9
NC_010725:750911:7762137762137783032091Methylobacterium populi BJ001, complete genomepeptidase C14 caspase catalytic subunit p202e-0653.5
NC_019892:5171629:5196968519696851982271260Singulisphaera acidiphila DSM 18658 chromosome, complete genomehypothetical protein1e-0551.6