Pre_GI: BLASTP Hits

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Query: NC_009439:574437:585927 Pseudomonas mendocina ymp, complete genome

Start: 585927, End: 586418, Length: 492

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015410:617020:628275628275628766492Pseudomonas mendocina NK-01 chromosome, complete genomeshikimate kinase1e-87321
NC_015740:636667:649179649179649697519Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeshikimate kinase2e-68257
NC_009434:608765:622416622416622883468Pseudomonas stutzeri A1501, complete genomeshikimate kinase7e-59226
NC_007645:6096345:610373661037366104314579Hahella chejuensis KCTC 2396, complete genomeShikimate kinase4e-53206
NC_007912:3403101:341067834106783411187510Saccharophagus degradans 2-40, complete genomeDihydropteroate synthase2e-48191
NC_016893:181951:181951181951182472522Wigglesworthia glossinidia endosymbiont of Glossina morsitansshikimate kinase I1e-45181
NC_017259:523840:551168551168551692525Buchnera aphidicola str. Ua (Uroleucon ambrosiae) chromosome,shikimate kinase I1e-44178
NC_020418:448687:449801449801450325525Morganella morganii subsp. morganii KT, complete genomeShikimate kinase I1e-43175
NC_015572:427732:448320448320448898579Methylomonas methanica MC09 chromosome, complete genomeShikimate kinase2e-43174
NC_007484:266594:278467278467279039573Nitrosococcus oceani ATCC 19707, complete genomeShikimate kinase6e-43172
NC_016616:1091606:113333411333341133906573Dechlorosoma suillum PS chromosome, complete genomeshikimate kinase8e-43172
NC_014315:352395:366818366818367387570Nitrosococcus watsoni C-113 chromosome, complete genomeshikimate kinase2e-42171
NC_007298:219783:231806231806232357552Dechloromonas aromatica RCB, complete genomeshikimate kinase3e-39160
NC_012559:2854640:286894828689482869475528Laribacter hongkongensis HLHK9, complete genomeAroK6e-39159
NC_015662:385461:407007407007407519513Buchnera aphidicola (Cinara tujafilina) chromosome, completeshikimate kinase I8e-37152
NC_008781:708811:722456722456723004549Polaromonas naphthalenivorans CJ2, complete genomeShikimate kinase9e-35145
NC_015458:2998000:301778330177833018379597Pusillimonas sp. T7-7 chromosome, complete genomeshikimate kinase1e-33141
NC_009484:1627734:1629352162935216310101659Acidiphilium cryptum JF-5 chromosome, complete genome3-dehydroquinate synthase5e-31133
NC_015186:1698000:1699614169961417012721659Acidiphilium multivorum AIU301, complete genomeshikimate kinase/3-dehydroquinate synthase5e-31133
NC_014910:242845:284052284052284594543Alicycliphilus denitrificans BC chromosome, complete genomeshikimate kinase7e-31132
NC_008825:3298506:330787133078713308425555Methylibium petroleiphilum PM1, complete genomeShikimate kinase5e-29126
NC_008786:18688:207272072721254528Verminephrobacter eiseniae EF01-2, complete genomeShikimate kinase9e-28122
NC_012846:2299282:230230623023062302938633Bartonella grahamii as4aup, complete genomeshikimate kinase4e-27120
NC_008783:29972:438734387344418546Bartonella bacilliformis KC583, complete genomeshikimate kinase6e-26116
NC_005955:1540838:154386415438641544496633Bartonella quintana str. Toulouse, complete genomeShikimate kinase2e-25115
NC_014721:1777644:178006517800651780583519Caldicellulosiruptor kristjanssonii 177R1B chromosome, completeshikimate kinase1e-25115
NC_014657:1518721:152002515200251520543519Caldicellulosiruptor owensensis OL chromosome, complete genomeshikimate kinase2e-25114
NC_009437:2367842:237024423702442370762519Caldicellulosiruptor saccharolyticus DSM 8903, complete genomeshikimate kinase3e-25114
NC_014392:969498:100732810073281007846519Caldicellulosiruptor obsidiansis OB47 chromosome, complete genomeShikimate kinase6e-25113
NC_014720:1161841:117966211796621180180519Caldicellulosiruptor kronotskyensis 2002 chromosome, completeshikimate kinase7e-25113
NC_005956:1888500:189162918916291892261633Bartonella henselae str. Houston-1, complete genomeShikimate kinase1e-24112
NC_014652:1032711:107212910721291072647519Caldicellulosiruptor hydrothermalis 108 chromosome, completeshikimate kinase7e-25112
NC_015949:1180755:118317611831761183694519Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeShikimate kinase7e-25112
NC_012034:1783912:178633317863331786851519Anaerocellum thermophilum DSM 6725, complete genomeShikimate kinase3e-24110
NC_005071:172364:187847187847188425579Prochlorococcus marinus str. MIT 9313, complete genomeshikimate kinase1e-23108
NC_008820:211616:224035224035224613579Prochlorococcus marinus str. MIT 9303, complete genomeShikimate kinase1e-23108
NC_015672:1921023:195215819521581952661504Flexistipes sinusarabici DSM 4947 chromosome, complete genomeShikimate kinase3e-23107
NC_014761:1405408:142611814261181426678561Oceanithermus profundus DSM 14977 chromosome, complete genomeshikimate kinase6e-23106
NC_015977:2807782:284427328442732844785513Roseburia hominis A2-183 chromosome, complete genomechorismate mutase5e-23106
NC_013939:420500:432764432764433264501Deferribacter desulfuricans SSM1, complete genomeshikimate kinase3e-22104
NC_016801:1361597:137565813756581376206549Corynebacterium diphtheriae C7 (beta) chromosome, complete genomeshikimate kinase2e-21101
NC_016800:1344189:135909413590941359642549Corynebacterium diphtheriae BH8 chromosome, complete genomeshikimate kinase2e-21101
NC_016799:1343020:138598213859821386530549Corynebacterium diphtheriae 31A chromosome, complete genomeshikimate kinase2e-21101
NC_016789:1334514:137633813763381376886549Corynebacterium diphtheriae PW8 chromosome, complete genomeshikimate kinase2e-21101
NC_016785:1297208:131211313121131312661549Corynebacterium diphtheriae CDCE 8392 chromosome, complete genomeshikimate kinase3e-21100
NC_016802:1317365:133142913314291331950522Corynebacterium diphtheriae HC02 chromosome, complete genomeshikimate kinase7e-2199.8
NC_002935:1315019:135683813568381357359522Corynebacterium diphtheriae NCTC 13129, complete genomeshikimate kinase7e-2199.8
NC_016790:1259356:129733012973301297878549Corynebacterium diphtheriae VA01 chromosome, complete genomeshikimate kinase9e-2199.4
NC_016787:1276983:131994813199481320496549Corynebacterium diphtheriae HC03 chromosome, complete genomeshikimate kinase9e-2199.4
NC_016786:1316436:133050013305001331048549Corynebacterium diphtheriae HC01 chromosome, complete genomeshikimate kinase9e-2199.4
NC_016782:1316467:133053013305301331078549Corynebacterium diphtheriae 241 chromosome, complete genomeshikimate kinase9e-2199.4
NC_009483:2086021:211072621107262111235510Geobacter uraniireducens Rf4 chromosome, complete genomeshikimate kinase1e-2099
NC_016788:1315877:132994113299411330489549Corynebacterium diphtheriae HC04 chromosome, complete genomeshikimate kinase3e-2097.8
NC_016783:1313008:135483013548301355378549Corynebacterium diphtheriae INCA 402 chromosome, complete genomeshikimate kinase3e-2097.8
NC_017277:240863:259702259702260271570Synechocystis sp. PCC 6803, complete genomeshikimate kinase3e-2097.4
NC_017052:240851:259690259690260259570Synechocystis sp. PCC 6803 substr. PCC-N, complete genomeshikimate kinase3e-2097.4
NC_017039:240863:259702259702260271570Synechocystis sp. PCC 6803 substr. PCC-P, complete genomeshikimate kinase3e-2097.4
NC_000911:240863:259702259702260271570Synechocystis sp. PCC 6803, complete genomeshikimate kinase3e-2097.4
NC_015161:792955:809324809324809923600Deinococcus proteolyticus MRP chromosome, complete genomeShikimate kinase7e-2096.3
NC_012438:159927:162385162385162885501Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genomeshikimate kinase1e-1995.1
NC_014355:399938:405290405290405820531Candidatus Nitrospira defluvii, complete genomeshikimate kinase3e-1994.4
NC_010002:6189733:619837661983766198921546Delftia acidovorans SPH-1, complete genomeShikimate kinase2e-1891.7
NC_009253:829913:836160836160836672513Desulfotomaculum reducens MI-1 chromosome, complete genomeshikimate kinase4e-1890.5
NC_017167:1648913:165366316536631654157495Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1shikimate kinase4e-1890.5
NC_015563:1172745:118525511852551185785531Delftia sp. Cs1-4 chromosome, complete genomeShikimate kinase5e-1890.1
NC_010634:1056441:107964910796491080173525Yersinia pseudotuberculosis PB1/+, complete genomeshikimate kinase3e-1787.8
NC_002678:5139557:5139557513955751466787122Mesorhizobium loti MAFF303099, complete genomehypothetical protein3e-1787.8
NC_017168:2158839:218125221812522181776525Yersinia pestis A1122 chromosome, complete genomeshikimate kinase4e-1787.4
NC_005810:754340:777603777603778127525Yersinia pestis biovar Microtus str. 91001, complete genomeshikimate kinase II4e-1787.4
NC_008149:1002453:102486610248661025390525Yersinia pestis Nepal516, complete genomeshikimate kinase II4e-1787.4
NC_004088:1075454:109786710978671098391525Yersinia pestis KIM, complete genomeshikimate kinase II4e-1787.4
NC_009051:2240480:224501422450142245514501Methanoculleus marisnigri JR1, complete genomeShikimate kinase6e-1786.7
NC_021175:687839:687366687366687842477Streptococcus oligofermentans AS 1.3089, complete genomeshikimate kinase8e-1786.3
NC_013521:1976331:199253919925391993105567Sanguibacter keddieii DSM 10542, complete genomeshikimate kinase2e-1685.1
NC_009953:2106572:212433521243352124838504Salinispora arenicola CNS-205 chromosome, complete genomeshikimate kinase4e-1684
NC_012891:1277966:130277913027791303270492Streptococcus dysgalactiae subsp. equisimilis GGS_124 chromosome 1,shikimate kinase4e-1684
NC_015966:2841420:286240428624042862982579Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomeShikimate kinase5e-1683.6
NC_014650:1410790:142732114273211427869549Geobacillus sp. Y4.1MC1 chromosome, complete genomeshikimate kinase4e-1683.6
NC_012108:2542328:254708525470852547606522Desulfobacterium autotrophicum HRM2, complete genomeAroL6e-1683.2
NC_015311:720631:723056723056723616561Prevotella denticola F0289 chromosome, complete genomeshikimate kinase2e-1581.6
NC_004337:309833:335648335648336172525Shigella flexneri 2a str. 301, complete genomeshikimate kinase II1e-1479
NC_004741:310382:334782334782335306525Shigella flexneri 2a str. 2457T, complete genomeshikimate kinase II1e-1479
NC_017328:335160:353512353512354036525Shigella flexneri 2002017 chromosome, complete genomeshikimate kinase1e-1479
NC_014960:216965:2254262254262269911566Anaerolinea thermophila UNI-1, complete genomeshikimate kinase/3-dehydroquinate synthase1e-1479
NC_014364:2904443:290949329094932910035543Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeShikimate kinase8e-1476.3
NC_008593:2281896:230192423019242302418495Clostridium novyi NT, complete genomeshikimate kinase4e-1373.9
NC_013169:1290000:1293352129335212951331782Kytococcus sedentarius DSM 20547, complete genome3-dehydroquinate synthase5e-1373.6
NC_013522:1683326:1702497170249717040621566Thermanaerovibrio acidaminovorans DSM 6589, complete genomeShikimate kinase., 3-dehydroquinate synthase6e-1373.6
NC_017192:497950:504071504071504547477Arcobacter sp. L, complete genomeshikimate kinase1e-1272.4
NC_007296:1073784:109520110952011095692492Streptococcus pyogenes MGAS6180, complete genomeshikimate kinase3e-1271.2
NC_007205:424500:449239449239449751513Candidatus Pelagibacter ubique HTCC1062, complete genomeshikimate kinase9e-1269.3
NC_019973:6028795:6046450604645060516515202Mesorhizobium australicum WSM2073, complete genomeshikimate kinase1e-1169.3
NC_015675:6651899:6672161667216166773625202Mesorhizobium opportunistum WSM2075 chromosome, complete genomeShikimate kinase1e-1169.3
NC_003366:863437:876144876144876659516Clostridium perfringens str. 13, complete genomeshikimate kinase1e-1168.9
NC_008261:817295:829970829970830473504Clostridium perfringens ATCC 13124, complete genomeshikimate kinase2e-1168.2
NC_008262:784878:815057815057815560504Clostridium perfringens SM101, complete genomeshikimate kinase4e-1167
NC_016599:513357:530085530085530597513Owenweeksia hongkongensis DSM 17368 chromosome, complete genomeshikimate kinase8e-1166.2
NC_014365:2037506:205848620584862059016531Desulfarculus baarsii DSM 2075 chromosome, complete genomeshikimate kinase1e-1065.9
NC_019697:4108944:412439841243984125006609Chamaesiphon minutus PCC 6605, complete genomeshikimate kinase1e-1065.5
NC_015425:2528549:255205725520572552581525Clostridium botulinum BKT015925 chromosome, complete genomeshikimate kinase2e-1064.7
NC_016510:1828978:183576418357641836282519Flavobacterium columnare ATCC 49512 chromosome, complete genomeshikimate kinase5e-1063.5
NC_007953:938346:959539959539960510972Burkholderia xenovorans LB400 chromosome 3, complete sequenceTranscriptional regulator, XRE family with shikimate kinase activity2e-0858.5