Pre_GI: BLASTP Hits

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Query: NC_017328:2516000:2516083 Shigella flexneri 2002017 chromosome, complete genome

Start: 2516083, End: 2516706, Length: 624

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004337:2478461:247846124784612479084624Shigella flexneri 2a str. 301, complete genomeIS4 ORF1e-120431
NC_004741:2456297:245658024565802457185606Shigella flexneri 2a str. 2457T, complete genomeIS4 orf2e-117421
NC_004337:3590323:3938517393851739398631347Shigella flexneri 2a str. 301, complete genomeIS4 ORF7e-105379
NC_017328:3655876:3674947367494736762931347Shigella flexneri 2002017 chromosome, complete genomeIS4 ORF7e-105379
NC_011751:4992500:5010215501021550115611347Escherichia coli UMN026 chromosome, complete genomeputative IS4 transposase; KpLE2 phage-like element6e-105379
NC_007384:4095016:4114725411472541160711347Shigella sonnei Ss046, complete genomeIS4 ORF6e-105379
NC_007384:1696831:1711913171191317132591347Shigella sonnei Ss046, complete genomeIS4 ORF6e-105379
NC_016822:1781644:1784123178412317854691347Shigella sonnei 53G, complete genomeIS4 orf6e-105379
NC_016822:2678691:2678691267869126800371347Shigella sonnei 53G, complete genomeIS4 orf6e-105379
NC_004431:3513147:3532771353277135341201350Escherichia coli CFT073, complete genomeTransposase insG for insertion sequence element IS46e-105379
NC_004337:3590323:3917660391766039190061347Shigella flexneri 2a str. 301, complete genomeIS4 ORF1e-104378
NC_007384:2587876:2587876258787625892221347Shigella sonnei Ss046, complete genomeIS4 ORF4e-104377
NC_008258:269806:2883692883692897151347Shigella flexneri 5 str. 8401, complete genomeIS4 ORF1e-102372
NC_004741:4132056:4132056413205641333841329Shigella flexneri 2a str. 2457T, complete genomeIS4 orf1e-100365
NC_017328:3935185:3943321394332139446491329Shigella flexneri 2002017 chromosome, complete genomeIS4 ORF1e-100365
NC_000913:4494773:4500126450012645014541329Escherichia coli K12, complete genomeKpLE2 phage-like element; IS4 predicted transposase1e-100365
NC_010473:4596500:4601934460193446032621329Escherichia coli str. K-12 substr. DH10B, complete genomeKpLE2 phage-like element; IS4 predicted transposase1e-100365
AC_000091:4501430:4506783450678345081111329Escherichia coli W3110 DNA, complete genomeIS4 predicted transposase1e-100365
NC_012759:4433500:4438861443886144401891329Escherichia coli BW2952 chromosome, complete genomeKpLE2 phage-like element; IS4 putative transposase1e-100365
NC_012947:3917619:3928785392878539301131329Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completetransposase IS4 family protein1e-100365
NC_012967:4473368:4483995448399544853231329Escherichia coli B str. REL606 chromosome, complete genomeIS4 putative transposase1e-100365
NC_007613:4119771:4131701413170141330171317Shigella boydii Sb227, complete genomeIS4 ORF7e-93339
NC_004459:1679335:168362916836291684276648Vibrio vulnificus CMCP6 chromosome I, complete sequencehypothetical protein2e-50198
NC_010658:3622610:362515736251573625468312Shigella boydii CDC 3083-94, complete genomeIS4 ORF2e-48191
NC_015424:2462522:246967924696792470422744Aeromonas veronii B565 chromosome, complete genomeputative IS4 transposase; KpLE2 phage-like element3e-45181
NC_015061:3725921:3730563373056337318851323Rahnella sp. Y9602 chromosome, complete genometransposase IS4 family protein1e-39162
NC_017047:3793000:3795224379522437965461323Rahnella aquatilis HX2 chromosome, complete genometransposase IS4 family protein1e-39162
NC_017047:4379989:4402292440229244036141323Rahnella aquatilis HX2 chromosome, complete genometransposase IS4 family protein1e-39162
NC_011312:3060371:3060371306037130616961326Aliivibrio salmonicida LFI1238 chromosome chromosome 1, completetransposase1e-38159
NC_013440:3947493:3961875396187539632241350Haliangium ochraceum DSM 14365, complete genometransposase IS4 family protein4e-26117
NC_010625:229478:2380132380132393411329Burkholderia phymatum STM815 plasmid pBPHY01, complete sequencetransposase IS4 family protein8e-24110
NC_013716:4408201:4408201440820144095381338Citrobacter rodentium ICC168, complete genomeISCro3 transposase2e-1995.5
NC_005139:2201820:2256801225680122581381338Vibrio vulnificus YJ016 chromosome I, complete sequencetransposase and inactivated derivative6e-1994
NC_012912:1788308:1815719181571918170441326Dickeya zeae Ech1591, complete genometransposase IS4 family protein6e-1787.4
NC_012912:242709:2468462468462481711326Dickeya zeae Ech1591, complete genometransposase IS4 family protein6e-1787.4
NC_013716:1178383:118878511887851189279495Citrobacter rodentium ICC168, complete genome7e-1787
NC_009921:6691089:6701579670157967028411263Frankia sp. EAN1pec, complete genometransposase IS4 family protein1e-1273.2
NC_009921:3255833:3272508327250832737701263Frankia sp. EAN1pec, complete genometransposase IS4 family protein1e-1273.2
NC_009921:7660795:7677440767744076787021263Frankia sp. EAN1pec, complete genometransposase IS4 family protein1e-1273.2
NC_009921:7660795:7674205767420576754671263Frankia sp. EAN1pec, complete genometransposase IS4 family protein1e-1273.2
NC_009921:2565640:257536525753652576321957Frankia sp. EAN1pec, complete genomeinsertion element conserved hypothetical protein2e-1272.4
NC_019673:8057941:8062858806285880641231266Saccharothrix espanaensis DSM 44229 complete genomeTransposase, IS4 family2e-1168.9
NC_019673:1384795:1399984139998414012491266Saccharothrix espanaensis DSM 44229 complete genomeTransposase, IS4 family2e-1168.9
NC_021150:3303959:3306478330647833076441167Azotobacter vinelandii CA6, complete genomeTransposase, IS4 protein3e-1168.6
NC_012560:3303961:3306480330648033076461167Azotobacter vinelandii DJ, complete genomeTransposase, IS4 protein3e-1168.6
NC_007613:1038000:105845910584591058899441Shigella boydii Sb227, complete genomeIS2 ORF24e-1168.2
NC_019673:2051363:2104510210451021057841275Saccharothrix espanaensis DSM 44229 complete genomeTransposase, IS4 family9e-1167
NC_019673:3253650:3265193326519332664581266Saccharothrix espanaensis DSM 44229 complete genomeTransposase, IS4 family9e-1167
NC_014121:3627588:366694836669483667478531Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein1e-1066.2
NC_014121:489500:516627516627517451825Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein5e-1064.3
NC_004369:1268956:1282157128215712833711215Corynebacterium efficiens YS-314, complete genomeputative transposase1e-0963.2
NC_004369:41236:4297842978441921215Corynebacterium efficiens YS-314, complete genomehypothetical protein1e-0963.2
NC_004369:437594:4467754467754479621188Corynebacterium efficiens YS-314, complete genomehypothetical protein1e-0963.2
NC_014121:2330451:233879323387932338906114Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein1e-0963.2
NC_014618:1452927:146152914615291461654126Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein3e-0962
NC_007777:2543475:2556883255688325581211239Frankia sp. CcI3, complete genometransposase, IS41e-0860.1
NC_015957:196000:2076502076502090081359Streptomyces violaceusniger Tu 4113 chromosome, complete genometransposase IS4 family protein2e-0859.3
NC_015656:632960:6491266491266503881263Frankia symbiont of Datisca glomerata chromosome, complete genometransposase IS4 family protein2e-0858.9
NC_015656:632960:6453346453346465961263Frankia symbiont of Datisca glomerata chromosome, complete genometransposase IS4 family protein2e-0858.9
NC_015656:2795784:2804695280469528059301236Frankia symbiont of Datisca glomerata chromosome, complete genometransposase IS4 family protein2e-0858.9
NC_015656:4850833:4855454485545448566891236Frankia symbiont of Datisca glomerata chromosome, complete genometransposase IS4 family protein2e-0858.9
NC_015656:3232809:3239387323938732406221236Frankia symbiont of Datisca glomerata chromosome, complete genometransposase IS4 family protein2e-0858.9
NC_015656:3300747:3306809330680933080441236Frankia symbiont of Datisca glomerata chromosome, complete genometransposase IS4 family protein2e-0858.9
NC_013093:1909305:1910513191051319117331221Actinosynnema mirum DSM 43827, complete genometransposase IS4 family protein5e-0857.8
NC_009256:2945059:2946142294614229473501209Burkholderia vietnamiensis G4 chromosome 1, complete sequencetransposase, IS4 family protein8e-0857
NC_009255:213245:2203062203062215141209Burkholderia vietnamiensis G4 chromosome 2, complete sequencetransposase, IS4 family protein8e-0857
NC_009254:700891:7008917008917020991209Burkholderia vietnamiensis G4 chromosome 3, complete sequencetransposase, IS4 family protein8e-0857