Pre_GI: BLASTP Hits

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Query: NC_013716:3109700:3126937 Citrobacter rodentium ICC168, complete genome

Start: 3126937, End: 3127629, Length: 693

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014258:127500:136873136873137565693Pantoea vagans C9-1 plasmid pPag3, complete sequencetranscriptional activator protein PagR1e-99362
NC_014500:4691915:471160847116084712360753Dickeya dadantii 3937 chromosome, complete genomeDNA-binding transcriptional regulatory protein ExpR6e-44177
NC_012779:2755338:276783827678382768557720Edwardsiella ictaluri 93-146, complete genomeAHL-dependent transcriptional regulator5e-41167
NC_012880:135508:146864146864147574711Dickeya dadantii Ech703, complete genometranscriptional regulator, LuxR family5e-41167
NC_014618:2139639:215415321541532154866714Enterobacter cloacae SCF1 chromosome, complete genomeLuxR family transcriptional regulator2e-40166
NC_008150:2173708:218657821865782187315738Yersinia pestis Antiqua, complete genomequorum-sensing transcriptional activator YpeR2e-40165
NC_003143:2741478:275476827547682755505738Yersinia pestis CO92, complete genomequorum-sensing transcriptional activator YpeR2e-40165
NC_005810:2508671:252469225246922525429738Yersinia pestis biovar Microtus str. 91001, complete genomequorum-sensing transcriptional activator YpeR2e-40165
NC_017168:2999514:300692830069283007665738Yersinia pestis A1122 chromosome, complete genomequorum-sensing transcriptional activator YpeR2e-40165
NC_004088:1909880:191632619163261917063738Yersinia pestis KIM, complete genometranscriptional activator protein2e-40165
NC_014838:589581:599918599918600643726Pantoea sp. At-9b plasmid pPAT9B01, complete sequenceATP-dependent transcriptional regulator, MalT-like, LuxR family3e-38158
NC_010694:1052722:106386710638671064589723Erwinia tasmaniensis, complete genomeTranscriptional activator protein7e-38157
NC_014837:3633378:364479836447983645586789Pantoea sp. At-9b chromosome, complete genomeLuxR family transcriptional regulator1e-37156
NC_010634:3720214:375114637511463751889744Yersinia pseudotuberculosis PB1/+, complete genomeLuxR family transcriptional regulator9e-37153
NC_010159:172469:193682193682194425744Yersinia pestis Angola, complete genometranscriptional regulator, LuxR family9e-37153
NC_006155:3805640:383807438380743838817744Yersinia pseudotuberculosis IP 32953, complete genomeQuorum-sensing transcriptional regulator9e-37153
NC_003143:1059580:109199410919941092737744Yersinia pestis CO92, complete genomequorum-sensing transcriptional regulator9e-37153
NC_005810:3917254:392651139265113927254744Yersinia pestis biovar Microtus str. 91001, complete genomequorum-sensing transcriptional regulator9e-37153
NC_010465:893921:900476900476901219744Yersinia pseudotuberculosis YPIII, complete genometranscriptional regulator, LuxR family9e-37153
NC_008149:3556999:358796835879683588711744Yersinia pestis Nepal516, complete genomequorum-sensing transcriptional regulator9e-37153
NC_008150:317903:325409325409326152744Yersinia pestis Antiqua, complete genomequorum-sensing transcriptional regulator9e-37153
NC_004088:3689000:372009637200963720839744Yersinia pestis KIM, complete genometranscriptional activator9e-37153
NC_009708:874770:881339881339882082744Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeLuxR family transcriptional regulator9e-37153
NC_014029:961522:968094968094968837744Yersinia pestis Z176003 chromosome, complete genomequorum-sensing transcriptional regulator9e-37153
NC_017154:902739:910246910246910989744Yersinia pestis D106004 chromosome, complete genomequorum-sensing transcriptional regulator9e-37153
NC_017160:905783:912355912355913098744Yersinia pestis D182038 chromosome, complete genomequorum-sensing transcriptional regulator9e-37153
NC_017168:3286:125371253713280744Yersinia pestis A1122 chromosome, complete genomequorum-sensing transcriptional regulator9e-37153
NC_017265:809943:816515816515817258744Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,quorum-sensing transcriptional regulator9e-37153
NC_009381:588137:594691594691595434744Yersinia pestis Pestoides F chromosome, complete genomequorum-sensing transcriptional regulator8e-37153
NC_020211:554736:562400562400563116717Serratia marcescens WW4, complete genometranscriptional activator protein2e-36152
NC_014838:589581:598794598794599525732Pantoea sp. At-9b plasmid pPAT9B01, complete sequencetranscriptional regulator, LuxR family4e-36151
NC_015567:69190:867278672787458732Serratia sp. AS9 chromosome, complete genomeLuxR family transcriptional regulator9e-33140
NC_015566:69190:867278672787458732Serratia sp. AS12 chromosome, complete genomeLuxR family transcriptional regulator9e-33140
NC_016818:2836851:285495428549542855640687Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeDNA-binding protein5e-23107
NC_005773:1851116:187462718746271875328702Pseudomonas syringae pv. phaseolicola 1448A, complete genomeautoinducer transcriptional regulator AhlR7e-22103
NC_015259:734795:739811739811740503693Polymorphum gilvum SL003B-26A1 chromosome, complete genomePutative N-acyl homoserine lactone transcriptional regulator, LuxR-like protein1e-1893.2
NC_010410:3777076:379324937932493793965717Acinetobacter baumannii AYE, complete genomeputative Autoinducer-binding transcriptional regulator (LuxR family)2e-1892.4
NC_011586:164746:165921165921166637717Acinetobacter baumannii AB0057 chromosome, complete genomeeR transcriptional regulator2e-1892.4
NC_011595:3607402:362357536235753624291717Acinetobacter baumannii AB307-0294, complete genometranscriptional activator protein phzR2e-1892.4
NC_017171:155836:157012157012157728717Acinetobacter baumannii MDR-ZJ06 chromosome, complete genomeautoinducer-binding transcriptional regulator2e-1892.4
NC_017387:147906:149082149082149798717Acinetobacter baumannii TCDC-AB0715 chromosome, complete genomeautoinducer-binding transcriptional regulator2e-1892.4
NC_010682:460523:492274492274493035762Ralstonia pickettii 12J chromosome 1, complete sequencetranscriptional regulator, LuxR family7e-1890.5
NC_009085:131000:132302132302132898597Acinetobacter baumannii ATCC 17978, complete genomeeR transcriptional regulator1e-1790.5
NC_020453:1025891:102750510275051028296792Agromonas oligotrophica S58 DNA, complete genomehypothetical protein1e-1790.1
NC_019973:5650646:568189956818995682624726Mesorhizobium australicum WSM2073, complete genomeDNA-binding protein with HTH domain2e-1789
NC_015675:6276357:630761063076106308335726Mesorhizobium opportunistum WSM2075 chromosome, complete genomeLuxR family transcriptional regulator2e-1789
NC_016603:3259432:326063032606303261346717Acinetobacter calcoaceticus PHEA-2 chromosome, complete genometranscriptional activator of quorum sensing autoinducer synthesis transcription regulator protein5e-1788.2
NC_010611:154307:155484155484156200717Acinetobacter baumannii ACICU, complete genomeDNA-binding HTH domain-containing protein4e-1788.2
NC_014259:3984568:400097840009784001694717Acinetobacter sp. DR1 chromosome, complete genomeTranscriptional activator protein phzR1e-1686.7
NC_015259:485015:532878532878533531654Polymorphum gilvum SL003B-26A1 chromosome, complete genomeLuxR family transcriptional regulator3e-1685.5
NC_015675:6538500:655225765522576553003747Mesorhizobium opportunistum WSM2075 chromosome, complete genomeLuxR family transcriptional regulator3e-1685.1
NC_014923:5970182:599758959975895998335747Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeAutoinducer-binding domain protein3e-1685.1
NC_019973:5899142:592654659265465927292747Mesorhizobium australicum WSM2073, complete genomeDNA-binding protein with HTH domain3e-1685.1
NC_009254:329700:339382339382340164783Burkholderia vietnamiensis G4 chromosome 3, complete sequenceresponse regulator receiver protein9e-1684
NC_016027:194842:203812203812204525714Gluconacetobacter xylinus NBRC 3288, complete genomeN-acylhomoserine lactone-dependent regulatory protein2e-1582.8
NC_008391:2045348:205893020589302059619690Burkholderia cepacia AMMD chromosome 2, complete sequencetranscriptional regulator, LuxR family2e-1582.4
NC_010676:304405:325754325754326458705Burkholderia phytofirmans PsJN chromosome 2, complete sequencetranscriptional regulator, LuxR family3e-1582
NC_015637:325561:342547342547343269723Vibrio anguillarum 775 chromosome chromosome II, complete sequenceLuxR family transcriptional regulator5e-1581.3
NC_004463:1992000:203431920343192035080762Bradyrhizobium japonicum USDA 110, complete genometranscriptional regulatory protein1e-1479.7
NC_011982:206784:225258225258225950693Agrobacterium vitis S4 plasmid pTiS4, complete sequencetranscriptional regulator7e-1477.4
NC_010172:5036385:503965450396545040385732Methylobacterium extorquens PA1, complete genomeAutoinducer-binding domain protein1e-1377
NC_009832:110239:126205126205126522318Serratia proteamaculans 568, complete genometranscriptional regulator, LuxR family2e-1375.9
NC_015675:6423000:642840064284006429137738Mesorhizobium opportunistum WSM2075 chromosome, complete genomeLuxR family transcriptional regulator3e-1375.5
NC_019973:5797000:580268958026895803426738Mesorhizobium australicum WSM2073, complete genomeDNA-binding protein with HTH domain3e-1375.5
NC_014923:5868000:587372958737295874466738Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeAutoinducer-binding domain protein3e-1375.5
NC_014834:614890:624618624618625346729Rhodopseudomonas palustris DX-1 chromosome, complete genomeautoinducer-binding domain-containing protein5e-1374.7
NC_010505:4990472:501816850181685018758591Methylobacterium radiotolerans JCM 2831, complete genometwo component transcriptional regulator, LuxR family7e-1373.9
NC_010557:207846:211136211136211855720Burkholderia ambifaria MC40-6 chromosome 3, complete sequencetranscriptional regulator, LuxR family9e-1373.9
NC_014923:2672000:267549126754912676213723Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeAutoinducer-binding domain protein2e-1272.4
NC_015675:2839000:284249128424912843213723Mesorhizobium opportunistum WSM2075 chromosome, complete genomeLuxR family transcriptional regulator2e-1272.4
NC_019973:2744000:274754427475442748266723Mesorhizobium australicum WSM2073, complete genomeDNA-binding protein with HTH domain2e-1272.4
NC_003296:941920:978998978998979744747Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePROBABLE TRANSCRIPTIONAL ACTIVATOR OF QUORUM SENSING AUTOINDUCER SYNTHESIS TRANSCRIPTION REGULATOR PROTEIN8e-1270.9
NC_014837:1570500:157253015725301573252723Pantoea sp. At-9b chromosome, complete genomeLuxR family transcriptional regulator1e-1170.5
NC_010514:6000:278042780428550747Methylobacterium radiotolerans JCM 2831 plasmid pMRAD03, completetranscriptional regulator, LuxR family2e-1169.3
NC_014394:1594071:159742715974271598158732Gallionella capsiferriformans ES-2 chromosome, complete genometranscriptional regulator, LuxR family3e-1168.6
NC_012988:5516872:552180955218095522306498Methylobacterium extorquens DM4, complete genomeN-acylhomoserine lactone LuxR family transcriptional regulator1e-1067
NC_014310:845527:862340862340863056717Ralstonia solanacearum PSI07 megaplasmid, complete sequenceLuxR family transcriptional regulator1e-1067
NC_010125:2884762:293002229300222930741720Gluconacetobacter diazotrophicus PAl 5, complete genomeputative transcriptional regulator, luxR family1e-1066.6
NC_011979:2641500:265821026582102658956747Geobacter sp. FRC-32, complete genometranscriptional regulator, LuxR family3e-1065.9
NC_010515:2691000:271900327190032719722720Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencetranscriptional regulator, LuxR family4e-1065.1
NC_011001:2085986:208673720867372087456720Burkholderia cenocepacia J2315 chromosome 2, complete sequenceN-acylhomoserine lactone dependent regulatory protein CepR4e-1065.1
NC_007511:1147696:117772911777291178448720Burkholderia sp. 383 chromosome 2, complete sequencetranscriptional regulator, LuxR family5e-1064.7
NC_016514:2950860:295410229541022954824723Enterobacter cloacae EcWSU1 chromosome, complete genomeregulatory protein SdiA1e-0963.5
NC_016816:2953530:298349529834952984217723Pantoea ananatis LMG 5342, complete genometranscriptional activator protein PhzR1e-0963.5
NC_015259:673662:679113679113679880768Polymorphum gilvum SL003B-26A1 chromosome, complete genomeTranscriptional regulator, LuxR family1e-0963.5
NC_007778:3784104:379951837995183800240723Rhodopseudomonas palustris HaA2, complete genometranscriptional regulator, LuxR family2e-0963.2
NC_009436:2685910:270101327010132701735723Enterobacter sp. 638, complete genomeDNA-binding transcriptional activator SdiA2e-0962.4
NC_012856:2633890:265554826555482656153606Ralstonia pickettii 12D chromosome 1, complete genometwo component transcriptional regulator, LuxR family3e-0962
NC_014834:2206119:223396822339682234687720Rhodopseudomonas palustris DX-1 chromosome, complete genomeautoinducer-binding domain-containing protein4e-0962
NC_010681:121647:144448144448145068621Burkholderia phytofirmans PsJN chromosome 1, complete sequencetranscriptional regulator, LuxR family5e-0961.2
NC_010682:3033646:306006730600673060672606Ralstonia pickettii 12J chromosome 1, complete sequencetwo component transcriptional regulator, LuxR family7e-0960.8
NC_017249:8221992:822574082257408226213474Bradyrhizobium japonicum USDA 6, complete genometranscriptional regulator2e-0859.3
NC_007761:3047321:304927530492753050057783Rhizobium etli CFN 42, complete genomeautoinducer transcriptional regulator protein3e-0858.9
NC_016027:2580477:258117025811702581910741Gluconacetobacter xylinus NBRC 3288, complete genomeLuxR family transcriptional regulator6e-0857.8
NC_011146:896000:914063914063914383321Geobacter bemidjiensis Bem, complete genome8e-0857.4
NC_020453:6821500:683645968364596837193735Agromonas oligotrophica S58 DNA, complete genometranscriptional regulator, LuxR family2e-0756.2
NC_013446:2961647:296590429659042966623720Comamonas testosteroni CNB-2, complete genometranscriptional regulator, luxR family2e-0756.2
NC_010943:1884695:188720418872041887908705Stenotrophomonas maltophilia K279a, complete genomeputative LuxR family transcriptional regulatory protein3e-0755.5
NC_016027:2512297:252162525216252522323699Gluconacetobacter xylinus NBRC 3288, complete genomeLuxR family transcriptional regulator4e-0755.1
NC_011894:983572:101237610123761013104729Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, LuxR family5e-0754.7
NC_015554:4648919:465227746522774653170894Alteromonas sp. SN2 chromosome, complete genometwo-component response regulator1e-0653.5
NC_014152:554656:556201556201557064864Thermincola sp. JR, complete genometranscriptional regulator, LuxR family1e-0653.5
NC_009485:1604942:163120516312051631810606Bradyrhizobium sp. BTAi1 chromosome, complete genomeLuxR transcriptional regulator1e-0653.1
NC_012724:2547500:255223325522332552964732Burkholderia glumae BGR1 chromosome 1, complete genomeTranscriptional regulator, LuxR family protein2e-0653.1
NC_015567:2125415:213304521330452133749705Serratia sp. AS9 chromosome, complete genomeregulatory protein LuxR2e-0652.8
NC_015566:2125403:213303321330332133737705Serratia sp. AS12 chromosome, complete genomeregulatory protein LuxR2e-0652.8
NC_010506:2441944:244888424488842449501618Shewanella woodyi ATCC 51908, complete genomeATP-dependent transcriptional regulator, MalT-like, LuxR family2e-0652.8
NC_014311:1507945:152164815216481522406759Ralstonia solanacearum PSI07 chromosome, complete genomeLuxR family transcriptional regulator2e-0652.4
NC_017162:158289:159861159861160037177Acinetobacter baumannii 1656-2 chromosome, complete genomeER transcriptional regulator2e-0652.4
NC_012968:1108687:113172911317291132553825Methylotenera mobilis JLW8, complete genomeATP-dependent transcriptional regulator, MalT-like, LuxR family5e-0651.2
NC_010995:1101614:111834711183471119285939Cellvibrio japonicus Ueda107, complete genometwo-component transcriptional regulator, LuxR family9e-0650.4