Pre_GI: BLASTP Hits

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Query: NC_012668:3037345:3037747 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Start: 3037747, End: 3038652, Length: 906

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010554:2646806:272322427232242724129906Proteus mirabilis HI4320, complete genomeplasmid-related exonuclease1e-173608
NC_016445:89500:107938107938108843906Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeDNA polymerase III subunit epsilon3e-172604
NC_011146:2304475:232637523263752327283909Geobacter bemidjiensis Bem, complete genomeExonuclease RNase T and DNA polymerase III5e-50198
NC_018000:2543500:256118825611882562159972Sinorhizobium fredii USDA 257 chromosome, complete genomeexonuclease RNase T and DNA polymerase III3e-46185
NC_008686:405159:420268420268421179912Paracoccus denitrificans PD1222 chromosome 1, complete sequenceExonuclease, RNase T and DNA polymerase III4e-44178
NC_010725:3273261:328018132801813281077897Methylobacterium populi BJ001, complete genomeExonuclease RNase T and DNA polymerase III8e-40164
NC_009720:3377071:338825933882593389155897Xanthobacter autotrophicus Py2, complete genomeDNA polymerase III subunit epsilon1e-39164
NC_007626:2204767:225224322522432253163921Magnetospirillum magneticum AMB-1, complete genomeDNA polymerase III epsilon subunit and related 3'-5' exonuclease7e-38157
NC_004463:2475428:249083624908362491441606Bradyrhizobium japonicum USDA 110, complete genomeDNA polymerase III subunit epsilon5e-30131
NC_021171:415771:416797416797417411615Bacillus sp. 1NLA3E, complete genomeexonuclease family protein3e-1582.4
NC_010520:2585014:2616121261612126204194299Clostridium botulinum A3 str. Loch Maree, complete genomeDNA polymerase III, alpha subunit, Gram-positive type4e-1582
NC_012658:2584355:2611499261149926157974299Clostridium botulinum Ba4 str. 657 chromosome, complete genomeDNA polymerase III PolC3e-1479.7
NC_010516:2511035:2541591254159125458894299Clostridium botulinum B1 str. Okra, complete genomeDNA polymerase III, alpha subunit, Gram-positive type9e-1477.8
NC_009495:2524000:2553368255336825576664299Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeDNA polymerase III PolC1e-1377.4
NC_009697:2394826:2425391242539124296894299Clostridium botulinum A str. ATCC 19397 chromosome, completeDNA polymerase III PolC1e-1377.4
NC_009698:2367171:2397736239773624020344299Clostridium botulinum A str. Hall chromosome, complete genomeDNA polymerase III PolC1e-1377.4
NC_012563:2721658:2727878272787827321764299Clostridium botulinum A2 str. Kyoto, complete genomeDNA polymerase III, alpha subunit, Gram-positive type4e-1375.5
NC_013515:347671:3919693919693963664398Streptobacillus moniliformis DSM 12112, complete genomeDNA polymerase III, alpha subunit3e-1272.4
NC_015554:4724245:4724245472424547263772133Alteromonas sp. SN2 chromosome, complete genomeDNA polymerase III, epsilon subunit2e-1169.7
NC_019970:1343670:1355741135574113599734233Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeDNA polymerase III, alpha chain3e-1169.7
NC_017294:758992:7723037723037764964194Candidatus Arthromitus sp. SFB-mouse-Yit, complete genomeDNA polymerase III PolC3e-1169.3
NC_007350:1551457:1558499155849915628154317Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305,DNA polymerase III alpha chain PolC-type5e-1168.6
NC_014103:3985897:4000185400018540044954311Bacillus megaterium DSM319 chromosome, complete genomeDNA polymerase III subunit alpha6e-1168.6
NC_015389:2101841:2105296210529621082292934Coriobacterium glomerans PW2 chromosome, complete genomeDNA polymerase III, epsilon subunit6e-1168.2
NC_014366:1663034:167679716767971677699903Gamma proteobacterium HdN1, complete genomehypothetical protein8e-1167.8
NC_009253:2139379:2156194215619421604744281Desulfotomaculum reducens MI-1 chromosome, complete genomeDNA polymerase III subunit alpha1e-1067.4
NC_008820:1659612:166282916628291663794966Prochlorococcus marinus str. MIT 9303, complete genomepossible DNA polymerase III, epsilon subunit1e-1067.4
NC_014210:3742112:3757353375735337591401788Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,DNA polymerase III, epsilon subunit2e-1067
NC_011898:513835:5162685162685205694302Clostridium cellulolyticum H10, complete genomeDNA polymerase III, alpha subunit2e-1066.6
NC_003909:3606177:3606177360617736090892913Bacillus cereus ATCC 10987, complete genomeDNA polymerase III, alpha subunit, Gram-positive type2e-1066.6
NC_004722:3777907:3790222379022237945294308Bacillus cereus ATCC 14579, complete genomeDNA polymerase III subunit alpha2e-1066.6
NC_011725:3821789:3834107383410738384084302Bacillus cereus B4264 chromosome, complete genomeDNA polymerase III PolC2e-1066.6
NC_014171:3701051:3713367371336737176684302Bacillus thuringiensis BMB171 chromosome, complete genomeDNA polymerase III PolC2e-1066.6
NC_021182:4829000:4832933483293348372764344Clostridium pasteurianum BC1, complete genomeDNA polymerase III, alpha chain2e-1066.6
NC_010184:3675424:3688149368814936924504302Bacillus weihenstephanensis KBAB4, complete genomeDNA polymerase III, alpha subunit2e-1066.6
NC_011969:3549000:3561396356139635656974302Bacillus cereus Q1 chromosome, complete genomeDNA polymerase iii polc2e-1066.6
NC_011772:3787500:3799826379982638041274302Bacillus cereus G9842, complete genomeDNA polymerase III, alpha subunit, Gram-positive type2e-1066.6
NC_017208:3816753:3829460382946038337614302Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeDNA polymerase III PolC2e-1066.6
NC_005957:3638750:3651061365106136553624302Bacillus thuringiensis serovar konkukian str. 97-27, completeDNA polymerase III subunit alpha2e-1066.6
NC_016771:3555506:3569931356993135742324302Bacillus cereus NC7401, complete genomeDNA polymerase III subunit alpha2e-1066.6
NC_011658:3603009:3617434361743436217354302Bacillus cereus AH187 chromosome, complete genomeDNA polymerase III PolC2e-1066.6
NC_012121:897866:9022149022149065274314Staphylococcus carnosus subsp. carnosus TM300, complete genomehomolog of DNA polymerase III, alpha subunit2e-1066.2
NC_015514:2414617:2418229241822924200911863Cellulomonas fimi ATCC 484 chromosome, complete genomeDNA polymerase III subunit epsilon3e-1066.2
NC_009782:1327340:1331601133160113359174317Staphylococcus aureus subsp. aureus Mu3, complete genomeDNA polymerase III alpha chain PolC-type3e-1066.2
NC_017338:1234077:1236038123603812403544317Staphylococcus aureus subsp. aureus JKD6159 chromosome, completeDNA polymerase III subunit alpha3e-1065.9
NC_002952:1291444:1295705129570513000214317Staphylococcus aureus subsp. aureus MRSA252, complete genomeDNA polymerase III PolC-type3e-1065.9
NC_017341:1291583:1295844129584413001604317Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,DNA polymerase III subunit alpha3e-1065.9
NC_020453:896458:9170169170169191782163Agromonas oligotrophica S58 DNA, complete genomehypothetical protein4e-1065.5
NC_008600:3643905:3660271366027136631892919Bacillus thuringiensis str. Al Hakam, complete genomeDNA polymerase III, alpha subunit6e-1065.1
NC_012472:3661912:3678278367827836811902913Bacillus cereus 03BB102, complete genomeDNA polymerase III, PolC-type6e-1065.1
NC_016779:3579743:3596109359610935990212913Bacillus cereus F837/76 chromosome, complete genomeDNA polymerase III subunit alpha6e-1065.1
NC_014335:3567931:3580242358024235845434302Bacillus cereus biovar anthracis str. CI chromosome, completeDNA polymerase III subunit alpha5e-1065.1
NC_005945:3615623:3630085363008536343864302Bacillus anthracis str. Sterne, complete genomeDNA polymerase III subunit alpha5e-1065.1
NC_007530:3616828:3629517362951736338184302Bacillus anthracis str. 'Ames Ancestor', complete genomeDNA polymerase III subunit alpha5e-1065.1
NC_006274:3697255:3709943370994337142444302Bacillus cereus E33L, complete genomeDNA polymerase III subunit alpha5e-1065.1
NC_003997:3617000:3629390362939036336914302Bacillus anthracis str. Ames, complete genomeDNA polymerase III subunit alpha5e-1065.1
NC_011773:3651963:3664276366427636685774302Bacillus cereus AH820 chromosome, complete genomeDNA polymerase III PolC5e-1065.1
NC_012581:559182:6048696048696091704302Bacillus anthracis str. CDC 684 chromosome, complete genomeDNA polymerase III PolC5e-1065.1
NC_012659:3617000:3629417362941736337184302Bacillus anthracis str. A0248, complete genomeDNA polymerase III PolC5e-1065.1
NC_009674:2551759:2564124256412425684254302Bacillus cytotoxicus NVH 391-98 chromosome, complete genomeDNA polymerase III PolC8e-1064.7
NC_012814:1465738:147026014702601470826567Bifidobacterium animalis subsp. lactis Bl-04, complete genomeDNA polymerase III alpha subunit7e-1064.7
NC_012815:1465670:147019214701921470758567Bifidobacterium animalis subsp. lactis DSM 10140, complete genomeDNA polymerase III alpha subunit7e-1064.7
NC_017353:1699652:1711348171134817156644317Staphylococcus lugdunensis N920143, complete genomeDNA polymerase III PolC-type1e-0964.3
NC_007622:1214629:1218890121889012232064317Staphylococcus aureus RF122, complete genomeDNA polymerase III1e-0964.3
NC_005945:3359598:337683333768333377780948Bacillus anthracis str. Sterne, complete genomeDNA polymerase III subunit epsilon1e-0964.3
NC_015387:942974:942974942974943720747Marinithermus hydrothermalis DSM 14884 chromosome, complete genomeDNA polymerase III, epsilon subunit1e-0963.9
NC_008313:2629281:264558126455812646324744Ralstonia eutropha H16 chromosome 1, complete sequencehypothetical membrane associated protein,contains exonuclease domain1e-0963.9
NC_014152:1430156:1433347143334714376754329Thermincola sp. JR, complete genomeDNA polymerase III, alpha subunit2e-0963.5
NC_015589:1899329:1899329189932919036064278Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeDNA polymerase III subunit alpha2e-0963.5
NC_017179:1378875:1381865138186513861634299Clostridium difficile BI1, complete genomeDNA polymerase III PolC-type2e-0963.5
NC_013315:1370000:1372091137209113763894299Clostridium difficile CD196 chromosome, complete genomeDNA polymerase III PolC-type2e-0963.5
NC_013192:519600:5301375301375345164380Leptotrichia buccalis DSM 1135, complete genomeDNA polymerase III, alpha subunit3e-0963.2
NC_013165:3146000:3150468315046831534282961Slackia heliotrinireducens DSM 20476, complete genomeexonuclease, DNA polymerase III, epsilon subunit family2e-0963.2
NC_017511:602000:602234602234603028795Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genomeputative DNA polymerase III subunit2e-0963.2
NC_012778:841934:8669008669008714414542Eubacterium eligens ATCC 27750, complete genomeDNA polymerase III subunit alpha, the Gram-positive type3e-0962.8
NC_014727:1292213:1315998131599813203354338Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,DNA polymerase iii, alpha subunit (gram-positive type) (polc)3e-0962.8
NC_004461:921364:9423929423929467204329Staphylococcus epidermidis ATCC 12228, complete genomeDNA polymerase III, alpha chain PolC-type4e-0962.4
NC_015671:1540860:1558211155821115600791869Cellvibrio gilvus ATCC 13127 chromosome, complete genomeDNA polymerase III subunit epsilon1e-0860.8
NC_015222:2475792:2494021249402124954121392Nitrosomonas sp. AL212 chromosome, complete genomeDNA polymerase III, epsilon subunit1e-0860.5
NC_014960:1697818:1714903171490317177072805Anaerolinea thermophila UNI-1, complete genomeDnaQ exonuclease/DinG helicase family protein1e-0860.5
NC_013714:1048783:105428110542811054919639Bifidobacterium dentium Bd1, complete genomeDNA polymerase III, epsilon subunit2e-0860.1
NC_014387:1175927:1178121117812111827104590Butyrivibrio proteoclasticus B316 chromosome 1, complete genomeDNA polymerase III C PolC13e-0859.7
NC_007517:3430237:345016934501693450825657Geobacter metallireducens GS-15, complete genomeDNA polymerase III, epsilon subunit2e-0859.7
NC_014151:2312000:2313921231392123158161896Cellulomonas flavigena DSM 20109 chromosome, complete genomeDNA polymerase III, epsilon subunit4e-0858.9
NC_015760:61345:7446974469788634395Streptococcus salivarius CCHSS3, complete genomeDNA polymerase III polC-type (PolIII)5e-0858.5
NC_013204:3613824:3619594361959436224942901Eggerthella lenta DSM 2243, complete genomeDNA polymerase III, epsilon subunit8e-0858.2
NC_011365:1969198:199197119919711992306336Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genome1e-0757.8
NC_014363:2035141:4254425472593006Olsenella uli DSM 7084 chromosome, complete genomeDNA polymerase III, epsilon subunit1e-0757.8
NC_015588:1965787:1967662196766219693981737Isoptericola variabilis 225 chromosome, complete genomeDNA polymerase III, epsilon subunit9e-0857.8
NC_006449:58436:7157471574759684395Streptococcus thermophilus CNRZ1066, complete genomeDNA polymerase III subunit alpha1e-0757.4
NC_006448:59654:7279172791771854395Streptococcus thermophilus LMG 18311, complete genomeDNA polymerase III subunit alpha1e-0757.4
NC_008314:2686851:270009027000902700752663Ralstonia eutropha H16 chromosome 2, complete sequenceputative exonuclease2e-0757
NC_015381:1318818:133573613357361336347612Burkholderia gladioli BSR3 chromosome 1, complete sequenceDNA polymerase III subunit epsilon2e-0757
NC_013169:1661135:1661135166113516628891755Kytococcus sedentarius DSM 20547, complete genomeexonuclease, DNA polymerase III, epsilon subunit family2e-0756.6
NC_015737:2146953:216048921604892161424936Clostridium sp. SY8519, complete genomeDNA polymerase III subunit alpha3e-0756.2
NC_014727:2036340:205057920505792051475897Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,DNA polymerase iii polc-type4e-0755.5
NC_015975:1056731:1056731105673110610804350Lactobacillus ruminis ATCC 27782 chromosome, complete genomeDNA polymerase III PolC4e-0755.5
NC_012438:1514376:152834415283441528961618Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genomeDNA polymerase III PolC-type (PolIII)8e-0754.7
NC_009454:1462930:1466970146697014697832814Pelotomaculum thermopropionicum SI, complete genomehypothetical protein2e-0653.1