Pre_GI: BLASTP Hits

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Query: NC_010660:86445:91940 Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence

Start: 91940, End: 93055, Length: 1116

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007607:87000:1212281212281223431116Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceputative transposase0726
NC_013364:3701895:370879037087903709749960Escherichia coli O111:H- str. 11128, complete genome5e-63241
NC_013353:5090696:511128151112815112240960Escherichia coli O103:H2 str. 12009, complete genome5e-63241
AP010958:5090696:511128151112815112240960Escherichia coli O103:H2 str. 12009 DNA, complete genome5e-63241
NC_013008:3911356:391880239188023919692891Escherichia coli O157:H7 str. TW14359 chromosome, complete genometransposase3e-62239
NC_011353:3956630:396407639640763964966891Escherichia coli O157:H7 str. EC4115 chromosome, complete genome3e-62239
NC_013353:3627355:363495036349503635759810Escherichia coli O103:H2 str. 12009, complete genomeIS608 transposase2e-58226
AP010958:3627355:363495036349503635759810Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted IS608 transposase2e-58226
NC_002655:3919545:392714239271423927882741Escherichia coli O157:H7 EDL933, complete genomeputative transposase9e-58224
NC_011601:1466496:1481557148155714829301374Escherichia coli O127:H6 str. E2348/69 chromosome, complete genometransposase of ISEc138e-56218
NC_011601:1269500:1291265129126512926381374Escherichia coli O127:H6 str. E2348/69 chromosome, complete genometransposase of ISEc138e-56218
NC_011601:1077548:1098701109870111000741374Escherichia coli O127:H6 str. E2348/69 chromosome, complete genometransposase of ISEc138e-56218
NC_009801:2898426:2926464292646429276361173Escherichia coli E24377A, complete genometransposase, IS21 family9e-55214
NC_009801:995396:1011492101149210126641173Escherichia coli E24377A, complete genometransposase, IS21 family9e-55214
NC_009801:3374501:3391753339175333929251173Escherichia coli E24377A, complete genometransposase, IS21 family9e-55214
NC_007384:1320287:1339949133994913411211173Shigella sonnei Ss046, complete genomeIS21 ORF11e-49197
NC_007384:16500:1792117921190931173Shigella sonnei Ss046, complete genomeIS21 ORF11e-49197
NC_016822:1304398:1323567132356713247391173Shigella sonnei 53G, complete genomeintegrase for IS21, orfA1e-49197
NC_016822:1431200:1448391144839114495631173Shigella sonnei 53G, complete genomeintegrase for IS21, orfA1e-49197
NC_016822:3946500:3949797394979739509691173Shigella sonnei 53G, complete genomeintegrase for IS21, orfA1e-49197
NC_007384:1696831:169992616999261700405480Shigella sonnei Ss046, complete genomeIS21 ORF15e-49195
NC_007384:3741708:3758338375833837594591122Shigella sonnei Ss046, complete genomeIS21 ORF12e-48193
NC_011750:3545466:356015035601503561118969Escherichia coli IAI39 chromosome, complete genome2e-48193
NC_010498:1117938:112239611223961122995600Escherichia coli SMS-3-5, complete genome9e-33141
NC_007946:1119000:112082311208231121281459Escherichia coli UTI89, complete genomeputative transposase9e-31134
NC_004431:1211000:121150712115071211965459Escherichia coli CFT073, complete genomePutative Transposase3e-30132
NC_016822:15401:171421714218125984Shigella sonnei 53G, complete genomeintegrase for IS21, orfA6e-24112
NC_007946:1119000:112129311212931122186894Escherichia coli UTI89, complete genomehypothetical protein3e-1893.2
NC_010498:1117938:112305011230501123769720Escherichia coli SMS-3-5, complete genome2e-1687
NC_014228:3505320:3523246352324635243671122Xenorhabdus nematophila ATCC 19061, complete genome5e-1479
NC_004431:1211000:121197712119771212342366Escherichia coli CFT073, complete genomehypothetical protein7e-1478.6
NC_016822:15401:181591815918314156Shigella sonnei 53G, complete genomeputative transposase protein IstA5e-1168.9