Pre_GI: BLASTP Hits

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Query: NC_010001:2836995:2859263 Clostridium phytofermentans ISDg, complete genome

Start: 2859263, End: 2859625, Length: 363

Host Lineage: Lachnoclostridium phytofermentans; Lachnoclostridium; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolated from forest soil near the Quabbin Reservoir in Massachusetts, USA. This organism plays an important industrial and ecological role in the anaerobic fermentation of cellulose and produces economically significant levels of acetate and ethanol. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014152:1:206392063921016378Thermincola sp. JR, complete genometranscriptional regulator, GntR family1e-22104
UCMB5137:2128500:214259721425972142974378Bacillus atrophaeus UCMB-5137GntR family transcriptional regulator8e-1889
NC_014639:2169277:217930621793062179683378Bacillus atrophaeus 1942 chromosome, complete genomeGntR family transcriptional regulator2e-1787.4
CP002207:2169277:217930621793062179683378Bacillus atrophaeus 1942, complete genomeGntR family transcriptional regulator2e-1787.4
NC_009725:2859630:286726728672672867659393Bacillus amyloliquefaciens FZB42, complete genomeYtrA8e-1785.5
NC_014363:114239:129522129522129881360Olsenella uli DSM 7084 chromosome, complete genometranscriptional regulator, GntR family1e-1581.6
NC_012781:2148478:215126721512672151716450Eubacterium rectale ATCC 33656, complete genometranscriptional regulator, GntR family3e-1580.5
NC_016631:5478098:550109155010915501534444Granulicella mallensis MP5ACTX8 chromosome, complete genomeGntR family transcriptional regulator9e-1579
NC_009848:161373:170355170355170726372Bacillus pumilus SAFR-032, complete genomeGntR family transcriptional regulator2e-1477.8
NC_019897:329945:376575376575376955381Thermobacillus composti KWC4 chromosome, complete genometranscriptional regulator4e-1476.6
NC_008593:1917118:191914919191491919529381Clostridium novyi NT, complete genometranscriptional regulator, gntR family4e-1476.6
NC_014328:4387303:442000144200014420978978Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative regulatory protein9e-1475.5
NC_012673:2535427:257491425749142575303390Exiguobacterium sp. AT1b, complete genometranscriptional regulator, GntR family9e-1475.5
NC_015425:2144639:214552921455292145924396Clostridium botulinum BKT015925 chromosome, complete genomeGntR family transcriptional regulator2e-1374.3
NC_014833:1045180:106518010651801065554375Ruminococcus albus 7 chromosome, complete genomeGntR family transcriptional regulator3e-1373.9
NC_015949:47414:482944829448677384Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeGntR family transcriptional regulator1e-1271.6
NC_018515:1406816:142889914288991429282384Desulfosporosinus meridiei DSM 13257 chromosome, complete genometranscriptional regulator2e-1271.2
NC_008346:2579756:258415125841512584543393Syntrophomonas wolfei subsp. wolfei str. Goettingen, completetranscriptional regulator, GntR family2e-1270.9
NC_013204:2826500:282801928280192828498480Eggerthella lenta DSM 2243, complete genometranscriptional regulator, GntR family3e-1270.5
NC_014393:92500:928219282193204384Clostridium cellulovorans 743B chromosome, complete genometranscriptional regulator, GntR family4e-1269.7
NC_020164:887510:906911906911907288378Staphylococcus warneri SG1, complete genomeGntR family transcriptional regulator6e-1269.7
NC_011837:238160:267607267607268584978Clostridium kluyveri NBRC 12016, complete genomehypothetical protein1e-1168.6
NC_009706:238160:267607267607268584978Clostridium kluyveri DSM 555 chromosome, complete genometranscriptional regulator1e-1168.6
NC_013166:82986:869848698487373390Kangiella koreensis DSM 16069, complete genometranscriptional regulator, GntR family1e-1168.2
NC_017216:1092751:109362610936261094045420Bifidobacterium animalis subsp. lactis BLC1, complete genometranscriptional regulator, gntR family protein3e-1167
NC_011835:1819707:182058218205821821001420Bifidobacterium animalis subsp. lactis AD011 chromosome, completeregulatory protein GntR3e-1167
NC_017217:1092916:109379110937911094327537Bifidobacterium animalis subsp. lactis V9 chromosome, completehypothetical protein4e-1167
NC_012814:1092860:109373510937351094271537Bifidobacterium animalis subsp. lactis Bl-04, complete genomehypothetical protein4e-1167
NC_012815:1092795:109367010936701094206537Bifidobacterium animalis subsp. lactis DSM 10140, complete genomehypothetical protein4e-1167
NC_013517:2437574:247965924796592480018360Sebaldella termitidis ATCC 33386, complete genometranscriptional regulator, GntR family5e-1166.6
NC_017214:1727676:172855117285511729246696Bifidobacterium animalis subsp. lactis BB-12 chromosome, completeGntR family transcriptional regulator4e-1166.6
NC_017215:1091941:109343310934331094128696Bifidobacterium animalis subsp. lactis CNCM I-2494 chromosome,GntR family transcriptional regulator4e-1166.6
NC_008593:2457594:247967724796772480045369Clostridium novyi NT, complete genometranscriptional regulator, GntR family6e-1166.2
NC_009921:1611132:161877516187751619167393Frankia sp. EAN1pec, complete genometranscriptional regulator, GntR family6e-1166.2
NC_000853:771746:792240792240792605366Thermotoga maritima MSB8, complete genometranscriptional regulator, GntR family1e-1065.1
NC_018515:4442500:445361844536184454571954Desulfosporosinus meridiei DSM 13257 chromosome, complete genometranscriptional regulator2e-1064.7
NC_013642:545464:565944565944566309366Thermotoga naphthophila RKU-10, complete genometranscriptional regulator, GntR family2e-1064.7
NC_009486:155651:155651155651156016366Thermotoga petrophila RKU-1 chromosome, complete genomeregulatory protein GntR2e-1064.7
NC_011146:3537546:3546585354658535479791395Geobacter bemidjiensis Bem, complete genomeputative transcriptional regulator, GntR family2e-1064.7
NC_015425:2690448:271266827126682713036369Clostridium botulinum BKT015925 chromosome, complete genomeGntR family transcriptional regulator3e-1063.9
NC_004557:2711702:272619827261982727172975Clostridium tetani E88, complete genometranscriptional regulator, putative regular for glutamate degradation3e-1063.9
NC_002976:1540794:154170815417081542085378Staphylococcus epidermidis RP62A, complete genometranscriptional regulator, GntR family3e-1063.9
NC_013165:329185:374694374694375074381Slackia heliotrinireducens DSM 20476, complete genomepredicted transcriptional regulator6e-1062.8
NC_009480:703102:707376707376707744369Clavibacter michiganensis subsp. michiganensis NCPPB 382, completehypothetical protein8e-1062.4
NC_012658:545840:5538595538595553101452Clostridium botulinum Ba4 str. 657 chromosome, complete genomeGntR family transcriptional regulator2e-0961.2
NC_003030:279643:297523297523297888366Clostridium acetobutylicum ATCC 824, complete genomeTranscriptional regulator, GntR family2e-0961.2
NC_015687:279641:297521297521297886366Clostridium acetobutylicum DSM 1731 chromosome, complete genomeGntR family transcriptional regulator2e-0961.2
NC_017295:279633:297513297513297878366Clostridium acetobutylicum EA 2018 chromosome, complete genomeGntR family transcriptional regulator2e-0961.2
NC_014815:3272791:327794232779423278337396Micromonospora sp. L5 chromosome, complete genometranscriptional regulator, gntr family3e-0960.5
NC_013235:3913000:392692739269273927319393Nakamurella multipartita DSM 44233, complete genometranscriptional regulator, GntR family3e-0960.5
NC_013205:1275012:129900712990071299420414Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,transcriptional regulator, GntR family4e-0960.1
NC_017219:2014605:202231920223192022693375Bifidobacterium longum subsp. infantis ATCC 15697, complete genometranscriptional regulator4e-0960.1
NC_011593:2014787:202250120225012022875375Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,regulatory protein GntR4e-0960.1
NC_013235:593289:609126609126609497372Nakamurella multipartita DSM 44233, complete genometranscriptional regulator, GntR family5e-0959.7
NC_015589:3085442:309769230976923098066375Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeregulatory protein GntR5e-0959.7
NC_017219:2014605:201883520188352019284450Bifidobacterium longum subsp. infantis ATCC 15697, complete genomehypothetical protein6e-0959.3
NC_011593:2014787:201901720190172019466450Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,regulatory protein GntR6e-0959.3
NC_010999:2450974:245773324577332458107375Lactobacillus casei, complete genomeRegulatory protein GntR, HTH6e-0959.3
NC_020133:4889034:490252549025254902890366Mycobacterium liflandii 128FXT, complete genometranscriptional regulatory protein6e-0959.3
NC_004193:375416:375416375416675301299886Oceanobacillus iheyensis HTE831, complete genome1e-0858.5
NC_011899:1603500:1607699160769916088051107Halothermothrix orenii H 168, complete genomeregulatory protein GntR HTH2e-0858.2
NC_007498:1848437:1867467186746718688941428Pelobacter carbinolicus DSM 2380, complete genometranscriptional regulator, GntR family/aminotransferase class-I9e-0855.8
NC_004193:375416:546902546902547279378Oceanobacillus iheyensis HTE831, complete genometranscriptional regulator8e-0855.8
NC_015949:71474:862228622286587366Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeGntR family transcriptional regulator8e-0855.8
NC_016109:116995:143044143044143424381Kitasatospora setae KM-6054, complete genomeGntR family transcriptional regulator9e-0855.5
NC_014377:321949:321949321949322656708Thermosediminibacter oceani DSM 16646 chromosome, complete genometranscriptional regulator, GntR family9e-0855.5
NC_013730:3137391:3153355315335531547941440Spirosoma linguale DSM 74, complete genometranscriptional regulator, GntR family with aminotransferase domain1e-0755.5
NC_005085:1096000:111077111107711111643873Chromobacterium violaceum ATCC 12472, complete genomeprobable transcriptional regulator, GntR family1e-0755.1
NC_010511:4258000:4287991428799142893821392Methylobacterium sp. 4-46 chromosome, complete genometranscriptional regulator1e-0755.1
NC_016628:935420:9638059638059651691365Vibrio furnissii NCTC 11218 chromosome 2, complete sequenceGntR family transcriptional regulator1e-0755.1
NC_013947:2351208:236247523624752362864390Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, GntR family2e-0754.3
NC_014328:3482980:3506242350624235076901449Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative transcriptional regulator2e-0754.3
NC_012778:1946924:195058319505831950966384Eubacterium eligens ATCC 27750, complete genomeGntR family transcriptional regulator / MocR family aminotransferase2e-0754.3
NC_009699:1352211:135608613560861356457372Clostridium botulinum F str. Langeland chromosome, complete genomeGntR family transcriptional regulator2e-0754.3
NC_017297:1352506:135638113563811356752372Clostridium botulinum F str. 230613 chromosome, complete genomeGntR family transcriptional regulator2e-0754.3
NC_015957:8103472:812814981281498128580432Streptomyces violaceusniger Tu 4113 chromosome, complete genomeGntR family transcriptional regulator2e-0754.3
NC_008261:2524913:253311325331132533469357Clostridium perfringens ATCC 13124, complete genometranscriptional regulator, GntR family2e-0754.3
NC_010610:1580483:158392515839251584302378Lactobacillus fermentum IFO 3956, complete genometranscriptional regulator2e-0754.3
NC_016625:944925:9569719569719584911521Burkholderia sp. YI23 chromosome 2, complete sequenceGntR family transcriptional regulator2e-0754.3
NC_018524:1279156:1301474130147413030301557Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomebacterial regulatory s, gntR family protein2e-0754.3
NC_016048:3611146:3628587362858736299901404Oscillibacter valericigenes Sjm18-20, complete genomeputative GntR family transcriptional regulator3e-0753.9
NC_003911:1791878:1796102179610217975051404Silicibacter pomeroyi DSS-3, complete genometranscriptional regulator, GntR family3e-0753.9
NC_008268:361424:374193374193374933741Rhodococcus sp. RHA1, complete genometranscriptional regulator, GntR family4e-0753.5
NC_007677:1872459:188881218888121889792981Salinibacter ruber DSM 13855, complete genometranscriptional regulator, GntR family protein4e-0753.5
NC_012559:2309566:231322923132292313960732Laribacter hongkongensis HLHK9, complete genomeprobable transcriptional regulator, GntR family4e-0753.5
NC_010623:1871492:1919564191956419211351572Burkholderia phymatum STM815 chromosome 2, complete sequencetranscriptional regulator, GntR family with aminotransferase domain4e-0753.5
NC_011894:4013830:4026393402639340277841392Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, GntR family with aminotransferase domain protein3e-0753.5
NC_015556:2265940:2291096229109622925951500Pseudomonas fulva 12-X chromosome, complete genometranscriptional regulator, GntR family with aminotransferase domain5e-0753.1
NC_013716:1618249:162483116248311625787957Citrobacter rodentium ICC168, complete genomeputative GntR-family transcriptional regulator5e-0753.1
NC_013595:41245:542395423954604366Streptosporangium roseum DSM 43021, complete genometranscriptional regulator protein-like protein7e-0752.8
NC_011894:4013830:4040962404096240423561395Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, GntR family with aminotransferase domain protein8e-0752.4
NC_013174:601434:618920618920619279360Jonesia denitrificans DSM 20603, complete genometranscriptional regulator, GntR family8e-0752.4
NC_008686:1383891:1403811140381114052531443Paracoccus denitrificans PD1222 chromosome 1, complete sequenceputative transcriptional regulator, GntR family8e-0752.4
NC_006526:1976779:1999286199928620006591374Zymomonas mobilis subsp. mobilis ZM4, complete genometranscriptional regulatory protein1e-0652
NC_018515:3108755:3116969311696931184111443Desulfosporosinus meridiei DSM 13257 chromosome, complete genometranscriptional regulator with HTH domain and aminotransferase domain1e-0651.6
NC_017191:467207:4894184894184908061389Bacillus amyloliquefaciens XH7 chromosome, complete genomePLP-dependent transcriptional regulator1e-0651.6
NC_017188:461177:4833964833964847841389Bacillus amyloliquefaciens TA208 chromosome, complete genomePLP-dependent transcriptional regulator1e-0651.6
NC_010001:4250828:426343842634384263818381Clostridium phytofermentans ISDg, complete genometranscriptional regulator, GntR family2e-0651.6
NC_015942:63440:819408194082698759Acidithiobacillus ferrivorans SS3 chromosome, complete genomeGntR family transcriptional regulator with UTRA sensor domain2e-0651.6
NC_009654:91096:9749297492990691578Marinomonas sp. MWYL1, complete genomeGntR family transcriptional regulator2e-0651.2
NC_014376:3399366:340246434024643402877414Clostridium saccharolyticum WM1 chromosome, complete genometranscriptional regulator, GntR family2e-0651.2
NC_009706:3882500:389714138971413897554414Clostridium kluyveri DSM 555 chromosome, complete genometranscriptional regulator2e-0651.2
NC_011837:3814000:382864438286443829057414Clostridium kluyveri NBRC 12016, complete genomehypothetical protein2e-0651.2
NC_002947:4994335:5024177502417750255771401Pseudomonas putida KT2440, complete genometranscriptional regulator, GntR family2e-0651.2
NC_004129:2440744:2445027244502724464301404Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, GntR family2e-0651.2
NC_017190:466236:4818474818474832351389Bacillus amyloliquefaciens LL3 chromosome, complete genomePLP-dependent transcriptional regulator3e-0650.8
NC_014551:483773:4959184959184973061389Bacillus amyloliquefaciens DSM 7, complete genomePLP-dependent transcriptional regulator3e-0650.8
NC_016943:1956719:196450919645091964916408Blastococcus saxobsidens DD2, complete genomeGntR family transcriptional regulator2e-0650.8
NC_016626:1825845:1851434185143418528551422Burkholderia sp. YI23 plasmid byi_1p, complete sequenceGntR family transcriptional regulator2e-0650.8
NC_015589:38418:5409554095554821388Desulfotomaculum ruminis DSM 2154 chromosome, complete genome4e-0650.4
NC_009656:3127240:3129149312914931307621614Pseudomonas aeruginosa PA7 chromosome, complete genometranscriptional regulator3e-0650.4
NC_008262:419726:4197264197264212851560Clostridium perfringens SM101, complete genometranscriptional regulator, GntR family/aminotransferase3e-0650.4
NC_002516:2306776:2311333231133323127661434Pseudomonas aeruginosa PAO1, complete genomeprobable transcriptional regulator3e-0650.4
NC_016948:678939:688007688007688786780Mycobacterium intracellulare MOTT-64 chromosome, complete genometranscriptional regulator3e-0650.4
NC_021184:504728:5106275106275121441518Desulfotomaculum gibsoniae DSM 7213, complete genometranscriptional regulator with HTH domain and aminotransferase domain3e-0650.4
NC_003366:461602:4684394684394700011563Clostridium perfringens str. 13, complete genomeprobable transcription regulator4e-0650.1
NC_019896:3491000:3493104349310434945011398Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completehypothetical protein6e-0649.7
NC_008261:421000:4252114252114267731563Clostridium perfringens ATCC 13124, complete genometranscriptional regulator, GntR family/aminotransferase5e-0649.7
NC_014624:1010193:101191310119131012617705Eubacterium limosum KIST612 chromosome, complete genometranscriptional regulator5e-0649.7
NC_014976:2735423:2754223275422327556111389Bacillus subtilis BSn5 chromosome, complete genomeputative PLP-dependent transcriptional regulator6e-0649.3
NC_009482:87193:8719387193882931101Synechococcus sp. RCC307 chromosome, complete genometranscriptional regulator7e-0649.3
NC_013515:416760:430990430990431343354Streptobacillus moniliformis DSM 12112, complete genometranscriptional regulator, GntR family7e-0649.3
NC_020244:516993:5429505429505443471398Bacillus subtilis XF-1, complete genomeputative PLP-dependent transcriptional regulator8e-0649.3
NC_012673:1679744:1678344167834416797471404Exiguobacterium sp. AT1b, complete genometranscriptional regulator, GntR family with aminotransferase domain9e-0648.9