Pre_GI: BLASTP Hits

Some Help

Query: NC_007607:87000:121228 Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequence

Start: 121228, End: 122343, Length: 1116

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010660:86445:9194091940930551116Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceputative transposase0726
NC_013364:3701895:370879037087903709749960Escherichia coli O111:H- str. 11128, complete genome2e-63243
NC_013353:5090696:511128151112815112240960Escherichia coli O103:H2 str. 12009, complete genome2e-63243
AP010958:5090696:511128151112815112240960Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-63243
NC_013008:3911356:391880239188023919692891Escherichia coli O157:H7 str. TW14359 chromosome, complete genometransposase1e-62240
NC_011353:3956630:396407639640763964966891Escherichia coli O157:H7 str. EC4115 chromosome, complete genome1e-62240
NC_013353:3627355:363495036349503635759810Escherichia coli O103:H2 str. 12009, complete genomeIS608 transposase2e-59229
AP010958:3627355:363495036349503635759810Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted IS608 transposase2e-59229
NC_002655:3919545:392714239271423927882741Escherichia coli O157:H7 EDL933, complete genomeputative transposase2e-58226
NC_011601:1077548:1098701109870111000741374Escherichia coli O127:H6 str. E2348/69 chromosome, complete genometransposase of ISEc131e-56220
NC_011601:1466496:1481557148155714829301374Escherichia coli O127:H6 str. E2348/69 chromosome, complete genometransposase of ISEc131e-56220
NC_011601:1269500:1291265129126512926381374Escherichia coli O127:H6 str. E2348/69 chromosome, complete genometransposase of ISEc131e-56220
NC_009801:2898426:2926464292646429276361173Escherichia coli E24377A, complete genometransposase, IS21 family1e-55217
NC_009801:995396:1011492101149210126641173Escherichia coli E24377A, complete genometransposase, IS21 family1e-55217
NC_009801:3374501:3391753339175333929251173Escherichia coli E24377A, complete genometransposase, IS21 family1e-55217
NC_007384:1320287:1339949133994913411211173Shigella sonnei Ss046, complete genomeIS21 ORF11e-50200
NC_007384:16500:1792117921190931173Shigella sonnei Ss046, complete genomeIS21 ORF11e-50200
NC_016822:1304398:1323567132356713247391173Shigella sonnei 53G, complete genomeintegrase for IS21, orfA1e-50200
NC_016822:1431200:1448391144839114495631173Shigella sonnei 53G, complete genomeintegrase for IS21, orfA1e-50200
NC_016822:3946500:3949797394979739509691173Shigella sonnei 53G, complete genomeintegrase for IS21, orfA1e-50200
NC_007384:1696831:169992616999261700405480Shigella sonnei Ss046, complete genomeIS21 ORF18e-50197
NC_007384:3741708:3758338375833837594591122Shigella sonnei Ss046, complete genomeIS21 ORF12e-49196
NC_011750:3545466:356015035601503561118969Escherichia coli IAI39 chromosome, complete genome3e-49196
NC_010498:1117938:112239611223961122995600Escherichia coli SMS-3-5, complete genome8e-34144
NC_007946:1119000:112082311208231121281459Escherichia coli UTI89, complete genomeputative transposase8e-32138
NC_004431:1211000:121150712115071211965459Escherichia coli CFT073, complete genomePutative Transposase2e-31136
NC_016822:15401:171421714218125984Shigella sonnei 53G, complete genomeintegrase for IS21, orfA6e-24111
NC_007946:1119000:112129311212931122186894Escherichia coli UTI89, complete genomehypothetical protein4e-1892.4
NC_010498:1117938:112305011230501123769720Escherichia coli SMS-3-5, complete genome3e-1686.3
NC_014228:3505320:3523246352324635243671122Xenorhabdus nematophila ATCC 19061, complete genome5e-1479
NC_004431:1211000:121197712119771212342366Escherichia coli CFT073, complete genomehypothetical protein8e-1478.2
NC_016822:15401:181591815918314156Shigella sonnei 53G, complete genomeputative transposase protein IstA9e-1271.6